View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_87 (Length: 329)
Name: NF11278_low_87
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_87 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 32932611 - 32932922
Alignment:
| Q |
1 |
cagcactaaatatcatgattgcaaggatatttaggtggttggttatccaatttgaagtgagaaaatttatgtaaaccacccttaacccgacacatttcaa |
100 |
Q |
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| T |
32932611 |
cagcactaaatatcatgattgcaaggatatttaggtggttggttatccaatttgaagtgagaaaatttatgtaaaccacccttaacccgacacatttcaa |
32932710 |
T |
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| Q |
101 |
gtcaaccaaaaaagggcacgtcgaaaaatggaacaatgtcctagccacggccaccaatagccataacttgcca-tagaacataagctcttgtacattaaa |
199 |
Q |
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| T |
32932711 |
gtcaaccaaaaaagggcacgtcgaaaaatggaacaatgtcctagccacggccaccaatagccataacttgccagtagaacataaggtcttgtacattaaa |
32932810 |
T |
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| Q |
200 |
gttcatgcaggattccagatggaattggatgctcaaacaattgatttcagaggagaggagggaaaataattgaatgtgatgtacattattatctatcaat |
299 |
Q |
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| T |
32932811 |
gttcatgcaggattccagatggaattggatgctcaaacaattgatttcaaaggagaggagggaaaataattgaatgtgatgtacattatgttctatcaat |
32932910 |
T |
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| Q |
300 |
gatgtatagact |
311 |
Q |
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||| ||||||| |
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| T |
32932911 |
aatgcatagact |
32932922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 32921339 - 32921498
Alignment:
| Q |
5 |
actaaatatcatgattgcaaggatatttaggtggttggttatccaatttgaagtgagaaaatttatgtaaaccacccttaacccgacacatttcaagtca |
104 |
Q |
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| T |
32921339 |
actaaatatcatgattgcaaggatattttggtggttggttatccaatttgaattgagaaaa---------accgcccttgaccggacacatttgaagtca |
32921429 |
T |
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| Q |
105 |
accaaaaaagggcacgtcgaaaaatggaacaatgtcctagccacggccaccaat-agccataacttgcca |
173 |
Q |
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| T |
32921430 |
accaaaaa-gagcacgtcgaaaaatgcaacaatgtcctagccatggccaccagtaagccataacttgcca |
32921498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 32921730 - 32921783
Alignment:
| Q |
258 |
agggaaaataattgaatgtgatgtacattattatctatcaatgatgtatagact |
311 |
Q |
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| T |
32921730 |
agggaaaataattgaatgtcatgtacattattatctgtcaataatgtatagact |
32921783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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