View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_88 (Length: 328)

Name: NF11278_low_88
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_88
NF11278_low_88
[»] chr2 (8 HSPs)
chr2 (67-323)||(8394105-8394361)
chr2 (20-66)||(458648-458694)
chr2 (20-66)||(4331920-4331966)
chr2 (20-66)||(38629448-38629494)
chr2 (20-66)||(13480588-13480634)
chr2 (20-66)||(26170976-26171022)
chr2 (29-66)||(7722721-7722758)
chr2 (35-67)||(45443609-45443641)
[»] chr1 (20 HSPs)
chr1 (20-69)||(35273823-35273872)
chr1 (20-67)||(13146021-13146068)
chr1 (20-63)||(19247816-19247859)
chr1 (20-75)||(29922263-29922318)
chr1 (20-75)||(51776020-51776075)
chr1 (28-69)||(6016660-6016701)
chr1 (20-65)||(19514175-19514220)
chr1 (20-67)||(46291861-46291908)
chr1 (20-66)||(9640930-9640976)
chr1 (20-66)||(17605727-17605773)
chr1 (26-67)||(12601853-12601894)
chr1 (20-65)||(17474665-17474710)
chr1 (20-63)||(41712763-41712806)
chr1 (20-66)||(8114943-8114989)
chr1 (20-66)||(26307846-26307892)
chr1 (20-66)||(32086482-32086528)
chr1 (21-67)||(32118100-32118146)
chr1 (20-66)||(40498617-40498663)
chr1 (20-66)||(51002070-51002116)
chr1 (29-66)||(32561264-32561301)
[»] chr3 (11 HSPs)
chr3 (20-65)||(51662213-51662258)
chr3 (20-66)||(36232722-36232768)
chr3 (20-66)||(36885791-36885837)
chr3 (20-66)||(11095647-11095693)
chr3 (20-66)||(44354549-44354595)
chr3 (20-66)||(4596476-4596522)
chr3 (20-66)||(7681054-7681100)
chr3 (20-66)||(35039572-35039618)
chr3 (20-66)||(38145291-38145337)
chr3 (20-60)||(14279112-14279152)
chr3 (20-56)||(35233715-35233751)
[»] chr5 (16 HSPs)
chr5 (20-75)||(40738883-40738938)
chr5 (20-66)||(4621147-4621192)
chr5 (20-66)||(18864430-18864476)
chr5 (20-68)||(43548622-43548670)
chr5 (32-66)||(12189357-12189391)
chr5 (20-70)||(18978446-18978496)
chr5 (29-65)||(15272817-15272853)
chr5 (20-68)||(42437414-42437462)
chr5 (20-66)||(10666176-10666222)
chr5 (20-66)||(37340800-37340846)
chr5 (20-65)||(10552506-10552551)
chr5 (20-69)||(31498834-31498883)
chr5 (20-65)||(37105851-37105896)
chr5 (20-69)||(41881959-41882008)
chr5 (29-65)||(6245188-6245224)
chr5 (20-72)||(8232537-8232589)
[»] chr8 (11 HSPs)
chr8 (20-66)||(41942399-41942445)
chr8 (20-69)||(38945685-38945734)
chr8 (20-66)||(4005765-4005811)
chr8 (20-66)||(31793887-31793933)
chr8 (29-66)||(35329773-35329810)
chr8 (20-76)||(42687979-42688035)
chr8 (20-63)||(12722559-12722602)
chr8 (20-66)||(36057770-36057816)
chr8 (28-65)||(4229637-4229674)
chr8 (29-66)||(38460148-38460185)
chr8 (29-65)||(11266134-11266170)
[»] chr7 (8 HSPs)
chr7 (20-66)||(24980855-24980901)
chr7 (29-68)||(12847221-12847260)
chr7 (20-66)||(10594084-10594130)
chr7 (29-66)||(29042144-29042181)
chr7 (28-66)||(12428599-12428637)
chr7 (29-66)||(7883723-7883760)
chr7 (31-68)||(39598580-39598617)
chr7 (29-66)||(45870216-45870253)
[»] chr4 (22 HSPs)
chr4 (20-66)||(1522783-1522829)
chr4 (20-66)||(35339696-35339742)
chr4 (20-65)||(34159011-34159056)
chr4 (20-68)||(43621626-43621674)
chr4 (20-71)||(3026376-3026427)
chr4 (20-67)||(47467459-47467506)
chr4 (31-66)||(48349547-48349582)
chr4 (20-66)||(22847104-22847150)
chr4 (32-66)||(24896985-24897019)
chr4 (20-66)||(40430122-40430168)
chr4 (20-66)||(41202397-41202443)
chr4 (20-68)||(13962529-13962577)
chr4 (28-68)||(50602088-50602128)
chr4 (20-67)||(22301796-22301843)
chr4 (21-68)||(51322442-51322489)
chr4 (31-69)||(24034515-24034553)
chr4 (32-70)||(37683325-37683363)
chr4 (20-66)||(47429881-47429927)
chr4 (20-66)||(48990345-48990391)
chr4 (20-66)||(50561564-50561610)
chr4 (20-68)||(28804020-28804068)
chr4 (20-68)||(52307509-52307557)
[»] scaffold0578 (1 HSPs)
scaffold0578 (20-65)||(8719-8764)
[»] chr6 (7 HSPs)
chr6 (20-66)||(23350354-23350400)
chr6 (20-66)||(31091183-31091229)
chr6 (20-66)||(6925777-6925823)
chr6 (20-66)||(8525525-8525571)
chr6 (20-66)||(18024379-18024425)
chr6 (29-66)||(11369127-11369164)
chr6 (20-65)||(32173749-32173794)
[»] scaffold0007 (1 HSPs)
scaffold0007 (20-72)||(200027-200079)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 67 - 323
Target Start/End: Original strand, 8394105 - 8394361
Alignment:
Q  67 aaataaaaaacattctaaaacgaagcactagccaagttcatgcattgtacaaataaaaatttctgaataattcatagcttttgttctacatagtgttgtg 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  8394105 aaataaaaaacattctaaaacgaagcactagccaagttcatgcattgtacaaataaaaatttctgaataattcatagcttttgttctacgcagtgttgtg 8394204  T
Q  167 cagcctttgtggttttaattttactacgtcgcatgctaagacaccaaatcaatgctgggaattttgaacagagaccttgtcaattatttaatcaaactag 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394205 cagcctttgtggttttaattttactacgtcgcatgctaagacaccaaatcaatgctgggaattttgaacagagaccttgtcaattatttaatcaaactag 8394304  T
Q  267 tcaaccagaattttcttatctgattttgaccctttccttacccatccctttgcttct 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8394305 tcaaccagaattttcttatctgattttgaccctttccttacccatccctttggttct 8394361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 458648 - 458694
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  458648 attttaggatgcaaccaggattaaacagagtgtaattagaaaaactc 458694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4331920 - 4331966
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||    
T  4331920 attttaggatgcaaccaggattaaagagggtgtaattagaaaaactc 4331966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 38629448 - 38629494
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||    
T  38629448 attttaggatgcaaccaggattaaagagggtgtaattagaaaaactc 38629494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 13480588 - 13480634
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||| | ||||| |||||||||||| |||||||||||||||||||    
T  13480588 attttaaggtgcaatcaggattaaacatggtgtaattagaaaaactc 13480634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 26171022 - 26170976
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||| ||||||||| |||||||||||||||||||    
T  26171022 attttggggtgcaaccaagattaaacagggtgtaattagaaaaactc 26170976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 7722721 - 7722758
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  7722721 tgcaaccagaattaaacagggtgtaattagaaaaactc 7722758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 45443609 - 45443641
Alignment:
Q  35 caggattaaacaaggtgtaattagaaaaactca 67  Q
    |||||||||||| ||||||||||||||||||||    
T  45443609 caggattaaacatggtgtaattagaaaaactca 45443641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 35273872 - 35273823
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaa 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35273872 attttaggatgcaaccaggattaaacaaggtttaattagaaaaactcaaa 35273823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 13146068 - 13146021
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactca 67  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  13146068 attttagggtgcaaccaggattaaacagggtgtaattagaaaaactca 13146021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 19247816 - 19247859
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaa 63  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  19247816 attttaggatgcaaccaggattaaacaagatgtaattagaaaaa 19247859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 29922263 - 29922318
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaataaaaa 75  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| || |||||    
T  29922263 attttagggtgcaaccaggattaaacagggtgtaattagaaaaactccaacaaaaa 29922318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 51776075 - 51776020
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaataaaaa 75  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  51776075 attttgggatgcaaccaggattaaacagggtgtaattagaaaaactctaaaaaaaa 51776020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 6016660 - 6016701
Alignment:
Q  28 atgcaaccaggattaaacaaggtgtaattagaaaaactcaaa 69  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  6016660 atgcaaccaggattaaacagggtgtaattagaaaaactcaaa 6016701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 19514175 - 19514220
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  19514175 attttaagatgcaaccaggattaaacagggtgtaattagaaaaact 19514220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 46291861 - 46291908
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactca 67  Q
    |||||| |||||||||||||||||| || |||||||||||||||||||    
T  46291861 attttaagatgcaaccaggattaaataatgtgtaattagaaaaactca 46291908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 9640930 - 9640976
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||||||||||||||||| || | |||||||||||||||||||    
T  9640930 attttaggatgcaaccaggattgaaaagggtgtaattagaaaaactc 9640976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 17605773 - 17605727
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||||    
T  17605773 attttagggtgcaaccaggattacacagggtgtaattagaaaaactc 17605727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 12601894 - 12601853
Alignment:
Q  26 ggatgcaaccaggattaaacaaggtgtaattagaaaaactca 67  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  12601894 ggatgcaaccagaattaaacagggtgtaattagaaaaactca 12601853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 17474710 - 17474665
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||    
T  17474710 attttaggatgcaaccaggattaaagaggatgtaattagaaaaact 17474665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 41712806 - 41712763
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaa 63  Q
    ||||| || |||||||||||||||||| ||||||||||||||||    
T  41712806 attttggggtgcaaccaggattaaacagggtgtaattagaaaaa 41712763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 8114943 - 8114989
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  8114943 attttagggtgcaaccaggattaaacagtgtgtaattaaaaaaactc 8114989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 26307892 - 26307846
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||| | |||||||| ||||||||| |||||||||||||||||||    
T  26307892 attttaaggtgcaaccaagattaaacagggtgtaattagaaaaactc 26307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 32086528 - 32086482
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || ||||| |||||||||||| |||||||||||||||||||    
T  32086528 attttggggtgcaatcaggattaaacagggtgtaattagaaaaactc 32086482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 32118100 - 32118146
Alignment:
Q  21 ttttaggatgcaaccaggattaaacaaggtgtaattagaaaaactca 67  Q
    |||| ||||||||||||||||||||| ||| |||||| |||||||||    
T  32118100 ttttgggatgcaaccaggattaaacatggtataattaaaaaaactca 32118146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 40498663 - 40498617
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || ||||||||| |||||||| |||||||||||||||||||    
T  40498663 attttggggtgcaaccagaattaaacagggtgtaattagaaaaactc 40498617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 51002070 - 51002116
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| ||||| |||||||||||| ||| |||||||||||||||    
T  51002070 attttagggtgcaatcaggattaaacagggtataattagaaaaactc 51002116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 32561301 - 32561264
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||||||||| || |||||||||||||||||||    
T  32561301 tgcaaccaggattaatcatggtgtaattagaaaaactc 32561264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 51662213 - 51662258
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51662213 attttaggatgcaaccaggattaaacaagatgtaattagaaaaact 51662258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 36232722 - 36232768
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||    
T  36232722 attttagggtgcaaccaggattaaacatggtgtaattagaaaaactc 36232768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 36885791 - 36885837
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||    
T  36885791 attttagggtgcaaccaggattaaacagggtgtaattagaaaaactc 36885837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 11095693 - 11095647
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||| |||||||||||||||||| | |||||||||||||||||||    
T  11095693 attttatgatgcaaccaggattaaatagggtgtaattagaaaaactc 11095647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 44354549 - 44354595
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||    
T  44354549 attttggggtgcaaccaggattaaacagggtgtaattagaaaaactc 44354595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4596476 - 4596522
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| ||||||||| ||||||||||| | |||||||||||||||||    
T  4596476 attttgggatgcaactaggattaaacaggatgtaattagaaaaactc 4596522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 7681054 - 7681100
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| ||||||||| |||||| | |||||||||||||||||||    
T  7681054 attttagggtgcaaccagaattaaatagggtgtaattagaaaaactc 7681100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 35039618 - 35039572
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||| | |||||||||||||||||||    
T  35039618 attttggggtgcaaccaggattaaaaagggtgtaattagaaaaactc 35039572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 38145291 - 38145337
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| ||||||||| |||||||| | |||||||||||||||||    
T  38145291 attttagggtgcaaccagaattaaacaggatgtaattagaaaaactc 38145337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 14279152 - 14279112
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaa 60  Q
    |||||||| |||||||||||||||||  |||||||||||||    
T  14279152 attttagggtgcaaccaggattaaacggggtgtaattagaa 14279112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 35233715 - 35233751
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaatt 56  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  35233715 attttagaatgcaaccaggattaaacagggtgtaatt 35233751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 40738938 - 40738883
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaataaaaa 75  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| || |||||    
T  40738938 attttagggtgcaaccaggattaaacagggtgtaattagaaaaactctaaaaaaaa 40738883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 4621192 - 4621147
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  4621192 attttaggatgcaaccaggattaaac-aggtgtaattagaaaaactc 4621147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 18864476 - 18864430
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||    
T  18864476 attttagggtgcaaccaggattaaacagggtgtaattagaaaaactc 18864430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 43548622 - 43548670
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||    
T  43548622 attttggggtgcaaccaggattaaacagggtgtaattagaaaaactcaa 43548670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 12189357 - 12189391
Alignment:
Q  32 aaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||||||||||||||||||||||||||||||    
T  12189357 aaccaggattaaacaaggtgtaattagaaaaactc 12189391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 18978496 - 18978446
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaat 70  Q
    ||||| || |||||||||||||||||| |||||||||||||||| ||||||    
T  18978496 attttggggtgcaaccaggattaaacagggtgtaattagaaaaattcaaat 18978446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 15272817 - 15272853
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    |||||||||||||||||| ||||||||||||||||||    
T  15272817 tgcaaccaggattaaacagggtgtaattagaaaaact 15272853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 42437414 - 42437462
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    ||||| || ||||||||||||||||||  ||||||||||||||||||||    
T  42437414 attttggggtgcaaccaggattaaacagagtgtaattagaaaaactcaa 42437462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 10666176 - 10666222
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||||| |||||||||| ||||||||    
T  10666176 attttggggtgcaaccaggattaaacagggtgtaattataaaaactc 10666222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 37340846 - 37340800
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| |||||||| ||| |||||||| |||||||||||||||||||    
T  37340846 attttgggatgcaatcagaattaaacagggtgtaattagaaaaactc 37340800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 10552551 - 10552506
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    |||||| ||||||||||||||||| || | ||||||||||||||||    
T  10552551 attttaagatgcaaccaggattaatcaggatgtaattagaaaaact 10552506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 31498883 - 31498834
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaa 69  Q
    |||||||  |||||| || |||||||| ||||||||||||||||||||||    
T  31498883 attttagagtgcaacaagaattaaacagggtgtaattagaaaaactcaaa 31498834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 37105896 - 37105851
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    ||||||| |||||| ||||||||||||  |||||||||||||||||    
T  37105896 attttagaatgcaatcaggattaaacattgtgtaattagaaaaact 37105851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 41881959 - 41882008
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaa 69  Q
    ||||| || ||||||||  |||||||| ||||||||||||||||||||||    
T  41881959 attttggggtgcaaccaaaattaaacagggtgtaattagaaaaactcaaa 41882008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 6245224 - 6245188
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  6245224 tgcaaccagaattaaacagggtgtaattagaaaaact 6245188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 8232589 - 8232537
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaataa 72  Q
    ||||| || ||||||||||||||| ||  |||||||||||||||||| |||||    
T  8232589 attttggggtgcaaccaggattaagcagagtgtaattagaaaaactctaataa 8232537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 41942399 - 41942445
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  41942399 attttgggatgcaaccaggattaaacagggtgtaattagaaaaactc 41942445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 38945734 - 38945685
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaa 69  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  38945734 attttagggtgcaaccaggattaaacattgtgtaattagaaaaactcaaa 38945685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 4005811 - 4005765
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||    
T  4005811 attttaagatacaaccaggattaaacagggtgtaattagaaaaactc 4005765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 31793887 - 31793933
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||    
T  31793887 attttggggtgcaaccaggattaaacagggtgtaattagaaaaactc 31793933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 35329773 - 35329810
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||||||||||||| |||||||||||||||||||    
T  35329773 tgcaaccaggattaaacatggtgtaattagaaaaactc 35329810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 42687979 - 42688035
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaataaaaaa 76  Q
    ||||| || |||||||| |||||||||  ||||||||||||||||||||| ||||||    
T  42687979 attttggggtgcaaccaagattaaacagagtgtaattagaaaaactcaaaaaaaaaa 42688035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 12722602 - 12722559
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaa 63  Q
    ||||| || |||||||||||||||||| ||||||||||||||||    
T  12722602 attttggggtgcaaccaggattaaacagggtgtaattagaaaaa 12722559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 36057770 - 36057816
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || ||||||||| |||||||| |||||||||||||||||||    
T  36057770 attttggggtgcaaccagaattaaacagggtgtaattagaaaaactc 36057816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 4229674 - 4229637
Alignment:
Q  28 atgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  4229674 atgcaaccaggattaaacaggatgtaattagaaaaact 4229637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 38460148 - 38460185
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||||||||| || |||||||||||||||||||    
T  38460148 tgcaaccaggattaatcagggtgtaattagaaaaactc 38460185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 11266170 - 11266134
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  11266170 tgcaaccaggattaaacaaagtgtaattaaaaaaact 11266134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 24980901 - 24980855
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||    
T  24980901 attttagggtgcaaccaggattaaacagggtgtaattagaaaaactc 24980855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 12847221 - 12847260
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  12847221 tgcaaccaggattaaacagggtgtaattagaaaaactcaa 12847260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 10594130 - 10594084
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||    
T  10594130 attttggggtgcaaccaggattaaacagggtgtaattagaaaaactc 10594084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 29042181 - 29042144
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||| |||||||||||||||||||||||||||||||    
T  29042181 tgcaactaggattaaacaaggtgtaattagaaaaactc 29042144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 12428637 - 12428599
Alignment:
Q  28 atgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  12428637 atgcaaccaggattaaaaaaagtgtaattagaaaaactc 12428599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 7883723 - 7883760
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||||||||||||| | |||||||||||||||||    
T  7883723 tgcaaccaggattaaacatgatgtaattagaaaaactc 7883760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 39598580 - 39598617
Alignment:
Q  31 caaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  39598580 caaccagaattaaacagggtgtaattagaaaaactcaa 39598617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 45870216 - 45870253
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  45870216 tgcaaccagaattaaacatggtgtaattagaaaaactc 45870253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 1522829 - 1522783
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  1522829 attttaggatgcaaccaggattaaacagggtataattagaaaaactc 1522783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 35339696 - 35339742
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||    
T  35339696 attttagggtgcaaccaggattaaacatggtgtaattagaaaaactc 35339742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 34159056 - 34159011
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||    
T  34159056 attttaagatgcaaccagaattaaacaaggtgtaattagaaaaact 34159011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 43621626 - 43621674
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    |||||||||||||| |||||||||| | |||||||||||||||||||||    
T  43621626 attttaggatgcaatcaggattaaaaagggtgtaattagaaaaactcaa 43621674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 3026427 - 3026376
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaata 71  Q
    |||||||||||||| ||||||| |||| ||| ||||||||||||||||||||    
T  3026427 attttaggatgcaatcaggatttaacagggtttaattagaaaaactcaaata 3026376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 47467459 - 47467506
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactca 67  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||||||||    
T  47467459 attttgggatgcaaccatgattaaacagggtgtaattagaaaaactca 47467506  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 48349547 - 48349582
Alignment:
Q  31 caaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  48349547 caaccaggattaaacaaggtgtaattagaaaaactc 48349582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 22847150 - 22847104
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||    
T  22847150 attttggggtgcaaccaggattaaacagggtgtaattagaaaaactc 22847104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 24897019 - 24896985
Alignment:
Q  32 aaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||||||||||||||||||||||||||||||    
T  24897019 aaccaggattaaacaaggtgtaattagaaaaactc 24896985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 40430168 - 40430122
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||    
T  40430168 attttagggtgcaaccaggattaaacatgatgtaattagaaaaactc 40430122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 41202397 - 41202443
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||    
T  41202397 attttggggtgcaaccaggattaaacatggtgtaattagaaaaactc 41202443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 13962529 - 13962577
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    ||||| || |||||| ||||||||||| |||||||||||||||||||||    
T  13962529 attttggggtgcaactaggattaaacagggtgtaattagaaaaactcaa 13962577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 50602088 - 50602128
Alignment:
Q  28 atgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  50602088 atgcaaccaggattaaacagggtgtaattaaaaaaactcaa 50602128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 22301796 - 22301843
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactca 67  Q
    ||||| || |||||||||||||||||| ||||| ||||||||||||||    
T  22301796 attttggggtgcaaccaggattaaacagggtgtgattagaaaaactca 22301843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 51322442 - 51322489
Alignment:
Q  21 ttttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    |||| |||||||||||| ||||||||  ||||||||||||||||||||    
T  51322442 ttttgggatgcaaccagaattaaacagagtgtaattagaaaaactcaa 51322489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 24034553 - 24034515
Alignment:
Q  31 caaccaggattaaacaaggtgtaattagaaaaactcaaa 69  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  24034553 caaccagaattaaacagggtgtaattagaaaaactcaaa 24034515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 37683325 - 37683363
Alignment:
Q  32 aaccaggattaaacaaggtgtaattagaaaaactcaaat 70  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  37683325 aaccaggattaaacagggtgtgattagaaaaactcaaat 37683363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 47429881 - 47429927
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||||||||||||||||||||| |   |||||||||||||||||    
T  47429881 attttaggatgcaaccaggattaaatagaatgtaattagaaaaactc 47429927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 48990391 - 48990345
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| |||||| ||||||||| | |||||||||||||||||||    
T  48990391 attttagggtgcaacgaggattaaatagggtgtaattagaaaaactc 48990345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 50561610 - 50561564
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||  ||||||||||||||||||  ||||||||||||||||||    
T  50561610 attttagagtgcaaccaggattaaacagagtgtaattagaaaaactc 50561564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 28804020 - 28804068
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    |||||||| | |||||| ||||||||| |||| ||||||||||||||||    
T  28804020 attttagggtacaaccatgattaaacagggtgcaattagaaaaactcaa 28804068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 52307509 - 52307557
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaa 68  Q
    ||||||||||||||||| ||||||  | ||||||| |||||||||||||    
T  52307509 attttaggatgcaaccatgattaactagggtgtaagtagaaaaactcaa 52307557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 8764 - 8719
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  8764 attttaagatgcaaccaggattaaacagggtgtaattagaaaaact 8719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 23350400 - 23350354
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||    
T  23350400 attttggggtgcaaccaggattaaacagggtgtaattagaaaaactc 23350354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 31091183 - 31091229
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||    
T  31091183 attttggggtgcaaccaggattaaacatggtgtaattagaaaaactc 31091229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 6925823 - 6925777
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| || ||||| |||||||||||| |||||||||||||||||||    
T  6925823 attttggggtgcaatcaggattaaacagggtgtaattagaaaaactc 6925777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 8525571 - 8525525
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||| |||||||||||| ||||||||  ||||||||||||||||||    
T  8525571 attttgggatgcaaccagaattaaacagtgtgtaattagaaaaactc 8525525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 18024425 - 18024379
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    ||||||| ||| |||||| |||||||| |||||||||||||||||||    
T  18024425 attttagaatgtaaccagaattaaacagggtgtaattagaaaaactc 18024379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 11369127 - 11369164
Alignment:
Q  29 tgcaaccaggattaaacaaggtgtaattagaaaaactc 66  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  11369127 tgcaaccaagattaaacagggtgtaattagaaaaactc 11369164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 32173749 - 32173794
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaact 65  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  32173749 attttgggatgtaaccagaattaaacagggtgtaattagaaaaact 32173794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 200079 - 200027
Alignment:
Q  20 attttaggatgcaaccaggattaaacaaggtgtaattagaaaaactcaaataa 72  Q
    ||||| ||||||| ||||||||||||| | |||||||| ||||||||||||||    
T  200079 attttgggatgcatccaggattaaacaggatgtaattaaaaaaactcaaataa 200027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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