View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_91 (Length: 325)

Name: NF11278_low_91
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_91
NF11278_low_91
[»] chr5 (1 HSPs)
chr5 (18-313)||(41343631-41343922)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 41343631 - 41343922
Alignment:
Q  18 catactatgtacttagaagtgaggaattacgagttacaacccacatctcgacatatcaaatatctatacaannnnnnnactatgtgagctaaatttacta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||       |    |||||||||||||||||    
T  41343631 catactatgtacttagaagtgaggaattacgagttacaacccgtgtctcgacatatcaaatatctatacaattttttta----gtgagctaaatttacta 41343726  T
Q  118 gactaatcgttctctttctaaatagataaacattaaagaaaacaagatattacctatagttccaaccacaatttgccatgtgatttccacaggagccgga 217  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41343727 gactaatcattctctttctaaatagataaacattaaaggaaacaagatattacctatagttccaaccacaatttgccatgtgatttcgacaggagccgga 41343826  T
Q  218 tcaagtactgtggttacatcactcacagacacaacacctatccttgttcttctttttgttgttgttctagcattcttaaccccaaaatcacaggtt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  41343827 tcaagtactgtggttacatcactcacagacacaacacctatccttgttcttctttttgttgttgttcttgcattcttaaccccaaaatcccaggtt 41343922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University