View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_93 (Length: 318)
Name: NF11278_low_93
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 3598797 - 3598492
Alignment:
| Q |
1 |
aaggcttgctgcagctttagaaacacaaattgcggaaggccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaagg |
100 |
Q |
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| T |
3598797 |
aaggcttgctgcagctttagaaacacaaattgcagatggccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaagg |
3598698 |
T |
|
| Q |
101 |
aggattgta------gttactcttctcttttgaatagattattttcatgagttgttagttcatttctcacatatacttggaaaaaattcatatttttaga |
194 |
Q |
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| T |
3598697 |
aggattggatacttggttactcttctcttttgaatagtttattttcatgagttgttagttcatttctcacatatacttggaaaaaattcatatttttaga |
3598598 |
T |
|
| Q |
195 |
tgttactggttatgttgagaaagacactgtcacggaaactgnnnnnnnnnnnnnnnntcagcaaggctatggatgcgacgctagaagatttagagtaagt |
294 |
Q |
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| T |
3598597 |
tgttactggttatgttgagaaagacactgtcacggaaactgaaaaaaatgaaaaaaatcagcaaggctatggatgcgacgctagaagatttagagtaagt |
3598498 |
T |
|
| Q |
295 |
cttaat |
300 |
Q |
| |
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|||||| |
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| T |
3598497 |
cttaat |
3598492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 108 - 300
Target Start/End: Original strand, 4356335 - 4356529
Alignment:
| Q |
108 |
tagttactcttctcttttgaatagattattttcatgagttgttagttcatttctcacatatacttggaaaa--aattcatatttttagatgttactggtt |
205 |
Q |
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| T |
4356335 |
tagttactcttctcttttgaattgtttattttcaggagttgttagttcatttctcatatatacttggaaaatgaaatcatattttaagatgttattggtc |
4356434 |
T |
|
| Q |
206 |
atgttgagaaagacactgtcacggaaactgnnnnnnnnnnnnnnnntcagcaaggctatggatgcgacgctagaagatttagagtaagtcttaat |
300 |
Q |
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| T |
4356435 |
atgttgagaaagacactgtcaaggaaactgaaaaaaaatggaaaaatcagcaaggctacggttgtgacgctagaagatttagagcaagtcttaat |
4356529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 45221519 - 45221399
Alignment:
| Q |
108 |
tagttactcttctcttttgaatagattattttcatgagttgttagttcatttctcacatatacttggaaaa--aattcatatttttagatgttactggtt |
205 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||| |||| |
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| T |
45221519 |
tagttactcttctcttttgaattgtttattttcatgagtttttagttcatttctcatatatacttggaaaatgaaatcatatttttagatgttattggtc |
45221420 |
T |
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| Q |
206 |
atgttgagaaagacactgtca |
226 |
Q |
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||||||||||||||||||||| |
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| T |
45221419 |
atgttgagaaagacactgtca |
45221399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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