View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_96 (Length: 302)

Name: NF11278_low_96
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_96
NF11278_low_96
[»] chr2 (2 HSPs)
chr2 (90-284)||(8113454-8113657)
chr2 (155-231)||(8111903-8111979)
[»] chr1 (2 HSPs)
chr1 (134-231)||(40502095-40502192)
chr1 (139-183)||(40499637-40499681)
[»] chr3 (1 HSPs)
chr3 (140-231)||(14006096-14006187)
[»] chr4 (2 HSPs)
chr4 (155-210)||(13182726-13182781)
chr4 (159-231)||(5415975-5416047)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 90 - 284
Target Start/End: Complemental strand, 8113657 - 8113454
Alignment:
Q  90 ttattcttttctcaaaattgnnnnnnncactagtgattaattttggattcggatcctctccatcttatgtctctgcagcagcctctcaatctaataatca 189  Q
    ||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  8113657 ttattcttttctcaaaattgtttttttcactagtgattaattttggattcgaatcctctccatcttatgtccctgcagcagcctcttaatctaataatca 8113558  T
Q  190 aatcattagatacatccaatggttgataggaaaaggcaataata---------acatagaaacgaaattgagaactaccaattaggaaacatgaccacga 280  Q
    || |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  8113557 aaccattagatacatccaatggttgataggaaaaggcaataatatgttgaaatacatagaaacgaaattgagaactaccaattaggaaacatgaccacga 8113458  T
Q  281 gact 284  Q
    ||||    
T  8113457 gact 8113454  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 8111903 - 8111979
Alignment:
Q  155 tatgtctctgcagcagcctctcaatctaataatcaaatcattagatacatccaatggttgataggaaaaggcaataa 231  Q
    ||||||||| || | | |||||||||||||||  ||| ||||||||||||||||||||||||||| ||| |||||||    
T  8111903 tatgtctctacaactgtctctcaatctaataaataaaccattagatacatccaatggttgatagggaaatgcaataa 8111979  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 40502192 - 40502095
Alignment:
Q  134 ggattcggatcctctccatcttatgtctctgcagcagcctctcaatctaataatcaaatcattagatacatccaatggttgataggaaaaggcaataa 231  Q
    |||| |||||||||| ||||||||||| || |||||||||||||||||||||||| || ||||||||||||||||| ||| |||| ||||| ||||||    
T  40502192 ggatccggatcctcttcatcttatgtccctacagcagcctctcaatctaataatcgaaccattagatacatccaatagttaatagcaaaagacaataa 40502095  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 40499637 - 40499681
Alignment:
Q  139 cggatcctctccatcttatgtctctgcagcagcctctcaatctaa 183  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||    
T  40499637 cggatcctctctatcctatgtctctacagcagcctctcaatctaa 40499681  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 14006096 - 14006187
Alignment:
Q  140 ggatcctctccatcttatgtctctgcagcagcctctcaatctaataatcaaatcattagatacatccaatggttgataggaaaaggcaataa 231  Q
    |||||||||| |||  | |||||| ||||||||||||||||||||||  ||| ||||||||||||| ||||||||||||  |||||||||||    
T  14006096 ggatcctctcaatccaaagtctctacagcagcctctcaatctaataaataaaccattagatacatcaaatggttgatagagaaaggcaataa 14006187  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 13182781 - 13182726
Alignment:
Q  155 tatgtctctgcagcagcctctcaatctaataatcaaatcattagatacatccaatg 210  Q
    ||||||||| ||||||||||||||||||||||  ||| ||||||||||||||||||    
T  13182781 tatgtctctacagcagcctctcaatctaataaataaaccattagatacatccaatg 13182726  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 5415975 - 5416047
Alignment:
Q  159 tctctgcagcagcctctcaatctaataatcaaatcattagatacatccaatggttgataggaaaaggcaataa 231  Q
    ||||||||| |||||||||||||| | | | || |||||||||| |||||||| ||||||| |||| ||||||    
T  5415975 tctctgcagtagcctctcaatctattgaaccaaccattagatacctccaatggatgatagggaaagacaataa 5416047  T

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