View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_97 (Length: 299)
Name: NF11278_low_97
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 9195082 - 9194792
Alignment:
| Q |
1 |
tcaatctctaaagcaataagattcttactacaactaggtttgttttggtctaccacaattgaagttgtcgttgcactattattatcaacaattttcatcg |
100 |
Q |
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| T |
9195082 |
tcaatctctaaagcaataagattcttactacaactaggtttgttttggtctaccacaattgaagttgtcgttgcactattattatcgacaattttcatcg |
9194983 |
T |
|
| Q |
101 |
ttttcatcattgcctttttcgatcccttttgttgccctaattttaaatcttcaatctttgcttttaactcattgatgtaatctactgcatcagataacaa |
200 |
Q |
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| T |
9194982 |
ttttcatcatcgcctttttcgattccttttgttgccctaattttaaatcttcgatctttgcttttaactcattgatgtaatctactgcatcagataacaa |
9194883 |
T |
|
| Q |
201 |
agaagctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttatctctcctttgtctctctgct |
291 |
Q |
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| T |
9194882 |
agaagctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgct |
9194792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 43 - 291
Target Start/End: Original strand, 9212990 - 9213238
Alignment:
| Q |
43 |
ttttggtctaccacaattgaagttgtcgttgcactattattatcaacaattttcatcgttttcatcattgcctttttcgatcccttttgttgccctaatt |
142 |
Q |
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| T |
9212990 |
ttttggtctaccacagttgaagttgtcgttgcactgttattatcgacaatttccatcgtttccatcttcacctttttcgattccttttgttgcactgatt |
9213089 |
T |
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| Q |
143 |
ttaaatcttcaatctttgcttttaactcattgatgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatct |
242 |
Q |
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| T |
9213090 |
ctaaatcttcaatctttgattttaactcattgatgtaatccactgcatctgataaaagagaagctttatccatctttgaaacatttggaaccacagatct |
9213189 |
T |
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| Q |
243 |
taaagcatagaatctatggtttagtttatctctcctttgtctctctgct |
291 |
Q |
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|||||| || ||||||||||||||||| ||||||||||||||||||||| |
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| T |
9213190 |
taaagcgtaaaatctatggtttagtttctctctcctttgtctctctgct |
9213238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 28081217 - 28081131
Alignment:
| Q |
205 |
gctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttatctctcctttgtctctctgct |
291 |
Q |
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| T |
28081217 |
gctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttctttgtctctctgct |
28081131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 17371053 - 17370997
Alignment:
| Q |
126 |
cttttgttgccctaattttaaatcttcaatctttgcttttaactcattgatgtaatc |
182 |
Q |
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| T |
17371053 |
cttttgttgcactaattctaaattttcaatctttgctttcaactcattgatgtaatc |
17370997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 24748802 - 24748746
Alignment:
| Q |
126 |
cttttgttgccctaattttaaatcttcaatctttgcttttaactcattgatgtaatc |
182 |
Q |
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| T |
24748802 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcatagatgtaatc |
24748746 |
T |
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