View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_98 (Length: 299)
Name: NF11278_low_98
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 2230562 - 2230829
Alignment:
| Q |
1 |
agaaacaaaatataaacctctttcatcttcaacaaatttgagaaagaaaaagtgagggcgaggaagcgagtcacacaacaacgacttgattaactcagtt |
100 |
Q |
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| T |
2230562 |
agaaacaaaatataaacctctttcatcttcaacaaatttgagaaagaaaaagtgagggcga--------gtcacacaacaacgacttgattaactcggtt |
2230653 |
T |
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| Q |
101 |
ggattaatggagttttgtgactcggtgttgtcgtgatggtggtagaaaagagtgaaaataatgaatgatgtattgatcttataaattaataaataattga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2230654 |
ggattaatggagttttgtgacttggtgttgtcgtgatggtggtagaaaagggtgaaaataatgaatgatgtattgatcttataaattaataaataattga |
2230753 |
T |
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| Q |
201 |
agg----taaatatttcaaataagacacataatacaattaagaggaatcaataatttgaaattttacattagtata |
272 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2230754 |
aggtaattaaatatttcaaataagacacataatacaattaagaggaatcaataatttgaaattttacattagtata |
2230829 |
T |
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