View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_99 (Length: 299)
Name: NF11278_low_99
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 125 - 281
Target Start/End: Original strand, 48283383 - 48283539
Alignment:
| Q |
125 |
ctgcttctgtgttctgacgttgacattgcgtacgaagttggttcgtcttcgtcctcgtccatgagagagaagagaggttctaagccgccttcaccttcaa |
224 |
Q |
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| T |
48283383 |
ctgcttctgtgttctgacgttgacattgcgtacgaagttggttcgtcttcgtcctcgtccatgagagagaagagaggttctaagccggcttcaccttcaa |
48283482 |
T |
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| Q |
225 |
cctctccctgtgctcttcttagagacgcataccacaattgcttccacaggtaatctt |
281 |
Q |
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| T |
48283483 |
cctctccctgtgctcttcttagagacgcataccacaattgcttccacaggtaatctt |
48283539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 48283239 - 48283309
Alignment:
| Q |
1 |
ttacatttgtaaatgtgataatttgacacaaaattaatgcataaaattgacgagggtgcacacttaattgg |
71 |
Q |
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| T |
48283239 |
ttacatttgtaaatgtgataatttgacacaaaattaatgcataaaattgacgagggtgcacacttaattgg |
48283309 |
T |
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