View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11279_high_10 (Length: 451)

Name: NF11279_high_10
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11279_high_10
NF11279_high_10
[»] chr4 (13 HSPs)
chr4 (31-434)||(36399665-36400069)
chr4 (31-434)||(36407122-36407524)
chr4 (25-374)||(36370520-36370877)
chr4 (31-367)||(36412312-36412647)
chr4 (25-430)||(36435734-36436140)
chr4 (25-434)||(36376232-36376642)
chr4 (25-434)||(36389476-36389878)
chr4 (210-432)||(36429279-36429502)
chr4 (207-434)||(36419284-36419512)
chr4 (25-194)||(36401201-36401369)
chr4 (25-149)||(36429554-36429678)
chr4 (31-177)||(36419564-36419709)
chr4 (383-434)||(36370440-36370491)
[»] chr8 (8 HSPs)
chr8 (278-342)||(15697356-15697420)
chr8 (278-347)||(15692680-15692749)
chr8 (278-339)||(15799863-15799924)
chr8 (278-339)||(15805395-15805456)
chr8 (278-336)||(15764414-15764472)
chr8 (278-339)||(15813245-15813306)
chr8 (71-132)||(19357642-19357703)
chr8 (278-342)||(15703735-15703799)
[»] chr2 (2 HSPs)
chr2 (257-364)||(2662470-2662577)
chr2 (99-132)||(2672709-2672742)
[»] scaffold0090 (1 HSPs)
scaffold0090 (263-300)||(8284-8321)
[»] chr1 (1 HSPs)
chr1 (263-300)||(47607375-47607412)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 31 - 434
Target Start/End: Complemental strand, 36400069 - 36399665
Alignment:
Q  31 gccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatatccgctg 130  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||    
T  36400069 gccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccattgcatattcgggtgacatgtatccactg 36399970  T
Q  131 caattatacaaaattgttaagagtatcataaaaa-tacatatccatctgtataatttcgtgattataagtgtttgagacatactatgttccgaccactct 229  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36399969 caattatacaaaatggtta-gagtatcataaaaaatacatatccatctgtataatttcgtgattataagtgtttgagacatactatgttccgaccactct 36399871  T
Q  230 ttctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggct 328  Q
    || ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36399870 ttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggct 36399771  T
Q  329 tttagatctctatgaattattttcagccttgaatcttggtgaagattataaacacctcgagcaatcacacaaataatttcaaaacgcttaacccaatcca 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  36399770 tttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctcgagcaatgccacaaataatttcaaaacgcttaccccaatcca 36399671  T
Q  429 atgatg 434  Q
    ||||||    
T  36399670 atgatg 36399665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 31 - 434
Target Start/End: Complemental strand, 36407524 - 36407122
Alignment:
Q  31 gccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatatccgctg 130  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  36407524 gccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccactg 36407425  T
Q  131 caattatacaaaattgttaagagtatcataaaaatacatatccatctgtataatttcgtgattataagtgtttgagacatactatgttccgaccactctt 230  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  36407424 caattaaacaaaatggtta-gagtatcataaaaatacatatccatctgtatattttcgtgat-ataagtgtgtgacacatactatgttccgaccactctt 36407327  T
Q  231 tctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggctt 329  Q
    | ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  36407326 tttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcgtcaaggagaacattgctggctt 36407227  T
Q  330 ttagatctctatgaattattttcagccttgaatcttggtgaagattataaacacctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaa 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||| |||||||||||||| |||||||||||    
T  36407226 ttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctcgagcaatcccacaaatgatttcaaaacgctttacccaatccaa 36407127  T
Q  430 tgatg 434  Q
    |||||    
T  36407126 tgatg 36407122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 25 - 374
Target Start/End: Complemental strand, 36370877 - 36370520
Alignment:
Q  25 tctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36370877 tctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatat 36370778  T
Q  125 ccgctgcaattataca-------aaattgttaagagtatcataaaaatacatatccatctgtataatttcgtgattataagtgtttgagacatactatgt 217  Q
     | |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370777 tcactgcaattatacattatacaaaattgttaagagtatcataaaaatacatatccatctgtataatttcgtgattataagtgtttgagacatactatgt 36370678  T
Q  218 tccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggaga 316  Q
    |||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  36370677 tccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcatttcagcatcaaggaga 36370578  T
Q  317 acattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370577 acattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagat 36370520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 31 - 367
Target Start/End: Complemental strand, 36412647 - 36412312
Alignment:
Q  31 gccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatatccgctg 130  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  36412647 gccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggtgacatatatccactg 36412548  T
Q  131 caattatacaaaattgttaagagtatcataaaaatacatatccatctgtataatttcgtgattataagtgtttgagacatactatgttccgaccactctt 230  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  36412547 caattaaacaaaatggtta-gagtatcataaaaatacatatccatctgtatattttcgtgat-ataagtgtgtgacacatactatgttccgaccactctt 36412450  T
Q  231 tctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggctt 329  Q
    | ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  36412449 tttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcgtcaaggagaacattgctggctt 36412350  T
Q  330 ttagatctctatgaattattttcagccttgaatcttgg 367  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36412349 ttagatctctatgaattattttcagccttgaatcttgg 36412312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 430
Target Start/End: Complemental strand, 36436140 - 36435734
Alignment:
Q  25 tctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatat 124  Q
    ||||||||||||||||||||| |||||||  |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||    
T  36436140 tctttggccagcaataatctccagtagtaaaacaccaaaactgaagacatccgatttagttgaatatcgtccttccattgcatattccggtgacatatat 36436041  T
Q  125 ccgctgcaattatacaaaattgttaagagtatcata-aaaatacatatccatctgtataat-ttcgtgattataagtgtttgagacatactatgttccga 222  Q
    || ||||||||||||||||| ||||||  | ||||| |||||||| || ||||| |||||| ||  || ||||||| || ||| |||||||||||||| |    
T  36436040 ccactgcaattatacaaaatagttaag--tctcatacaaaatacagattcatctctataatcttaatggttataagggtatgaaacatactatgttccaa 36435943  T
Q  223 ccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggagaacatt 321  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  36435942 ccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcaaggagaacatt 36435843  T
Q  322 gctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattataaacacctcgagcaatcacacaaataatttcaaaacgcttaacc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||  ||||||||||||||||||||||| ||    
T  36435842 gctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataatttcaaaacgcttaccc 36435743  T
Q  422 caatccaat 430  Q
    |||||||||    
T  36435742 caatccaat 36435734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 434
Target Start/End: Complemental strand, 36376642 - 36376232
Alignment:
Q  25 tctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatat 124  Q
    ||||||||| ||||||||||| |||||||  |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||    
T  36376642 tctttggccggcaataatctccagtagtaaaacaccaaaactgaagacatccgatttagttgaatatcgtccttccattgcatattccggtgacatatat 36376543  T
Q  125 ccgctgcaattatacaaaattgttaagagtatcata-aaaatacatatccatctgtataat-ttcgtgattataagtgtttgagacatactatgttccga 222  Q
    || ||||||||||||||||| ||||||  | ||||| |||||||| || ||||| |||||| ||  || ||||||| || ||| |||||||||||||| |    
T  36376542 ccactgcaattatacaaaatagttaag--tctcatacaaaatacagattcatctctataatcttaatggttataagggtgtgaaacatactatgttccaa 36376445  T
Q  223 ccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggagaacatt 321  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||||| ||    
T  36376444 ccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgaggagaacgtt 36376345  T
Q  322 gctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattataaacacctcgagcaatcacacaaataatttcaaaacgcttaacc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||| ||||||||||||||||||||||  ||    
T  36376344 gctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttcaaaacgctttccc 36376245  T
Q  422 caatccaatgatg 434  Q
    |||||||||||||    
T  36376244 caatccaatgatg 36376232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 25 - 434
Target Start/End: Complemental strand, 36389878 - 36389476
Alignment:
Q  25 tctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||    
T  36389878 tctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattccggtgacatgtat 36389779  T
Q  125 ccgctgcaattatacaaaattgtta-agagtatcataaaaatacatatccatctgtataatt-tcgtgattataagtgtttgagacatactatgttccga 222  Q
    || |||||||||||  ||||||||| ||| |||  | |           ||||| ||||||  | |||| |||||| || |||||||||||||||||| |    
T  36389778 ccactgcaattataggaaattgttagagaatatggtga-----------catctatataatcatggtgaatataagggtatgagacatactatgttccaa 36389690  T
Q  223 ccactctttctgttcttgcttggatttca----cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggagaac 318  Q
    ||||||||| |||| ||||||||||||||    | |||||||||||||||||||| || |||||||||||||| || |||||| |||| |||||||||||    
T  36389689 ccactctttttgttattgcttggatttcatcatcgtctccaaatattctagccataccaaaatctgagattttagggttcattgcagcgtcaaggagaac 36389590  T
Q  319 attgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattataaacacctcgagcaatcacacaaataatttcaaaacgctta 418  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||   |||| |||||||||||| |||  |||||||||||||| ||     
T  36389589 attgctggcttttaggtctctatgaatgattttcagccttgaatcttgatgaagatataaaacgcctcgagcaatcccac--ataatttcaaaacgtttg 36389492  T
Q  419 acccaatccaatgatg 434  Q
     |||||||||||||||    
T  36389491 ccccaatccaatgatg 36389476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 210 - 432
Target Start/End: Complemental strand, 36429502 - 36429279
Alignment:
Q  210 tactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcagcat 308  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  36429502 tactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcat 36429403  T
Q  309 caaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattataaacacctcgagcaatcacacaaataatttc 408  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||| |||||||||||||    
T  36429402 cgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttc 36429303  T
Q  409 aaaacgcttaacccaatccaatga 432  Q
    ||||||||| ||||||||||||||    
T  36429302 aaaacgctttacccaatccaatga 36429279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 207 - 434
Target Start/End: Complemental strand, 36419512 - 36419284
Alignment:
Q  207 acatactatgttccgaccactctttctgttcttgcttggatttca-cttctccaaatattctagccatgccgaaatctgagattttgggattcatttcag 305  Q
    |||||||||||||| || ||||||| |||||| ||||| |||||| |||||||||||||||||||||| || ||||| |||||||||||||||||| |||    
T  36419512 acatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccataccaaaatccgagattttgggattcattacag 36419413  T
Q  306 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagattataa-acacctcgagcaatcacacaaataa 404  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||||    
T  36419412 catcaaggagaacgttgctggcttttagatctctatggattattttcagccttgaatcttgatgaagat-ataatacacctcgagcaatcccacaaataa 36419314  T
Q  405 tttcaaaacgcttaacccaatccaatgatg 434  Q
    ||||||||||| ||||||||||||||||||    
T  36419313 tttcaaaacgcgtaacccaatccaatgatg 36419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 36401369 - 36401201
Alignment:
Q  25 tctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatat 124  Q
    |||||| ||||||||||||||||| |||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  36401369 tctttgaccagcaataatctctagcagtaagaccccataactaaagacatcagatttcgttgaatatcgtccttccattgcatattctggtgacatatat 36401270  T
Q  125 ccgctgcaattatacaaaattgttaagagtatcataaaaatacatatccatctgtataatttcgtgatta 194  Q
    || ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  36401269 ccactgcaattaaacaaaatggtt-agagtatcataaaaatacatatccatctgtatattttcgtaatta 36401201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 36429678 - 36429554
Alignment:
Q  25 tctttggccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatat 124  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  36429678 tctttggccagcaatagtctccagtagtatgaccccataactgaagacatcagatttcgttgaatatcgtccttccattgcatattctggtgacatatat 36429579  T
Q  125 ccgctgcaattatacaaaattgtta 149  Q
    ||||||||||||| |||||| ||||    
T  36429578 ccgctgcaattattcaaaatagtta 36429554  T

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Target: chr4; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 36419709 - 36419564
Alignment:
Q  31 gccagcaataatctctagtagtatgacaccataactgaagacatcagattttgttgaatatcgtccttccattgcatattctggcgacatatatccgctg 130  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||    
T  36419709 gccagcaataatctccagtagtaagaccccataactgaagacatcagattttgttgaatatcgtccttgcattgcatattccggagacatatatccactg 36419610  T
Q  131 caattatacaaaattgttaagagtatcataaaaatacatatccatct 177  Q
    |||||||||||||| | | | || |||||||||||||| ||| ||||    
T  36419609 caattatacaaaatagct-atagcatcataaaaatacagatcaatct 36419564  T

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Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 434
Target Start/End: Complemental strand, 36370491 - 36370440
Alignment:
Q  383 cctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatg 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370491 cctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatg 36370440  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 15697356 - 15697420
Alignment:
Q  278 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatg 342  Q
    |||||||| ||||| |||||||||||| |||| || ||||||||||||||||| |||||||||||    
T  15697356 aaatctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctctatg 15697420  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 15692680 - 15692749
Alignment:
Q  278 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaatta 347  Q
    |||||||| ||||||||||||||||||  ||| |  ||||||||||| ||||| ||||||||||||||||    
T  15692680 aaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaatta 15692749  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 15799863 - 15799924
Alignment:
Q  278 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 339  Q
    |||||||| ||||| |||||||||||| |||| || ||||||||||||||||| ||||||||    
T  15799863 aaatctgatatttttggattcatttcatcatccagaagaacattgctggctttcagatctct 15799924  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 15805395 - 15805456
Alignment:
Q  278 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 339  Q
    |||||||| ||||| |||||||||||| |||| || ||||||||||||||||| ||||||||    
T  15805395 aaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctct 15805456  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 15764414 - 15764472
Alignment:
Q  278 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatc 336  Q
    |||||||| ||||| |||||||||||| |||| || ||||||||||| ||||| |||||    
T  15764414 aaatctgatatttttggattcatttcatcatccagaagaacattgctagctttcagatc 15764472  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 15813245 - 15813306
Alignment:
Q  278 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 339  Q
    ||||| || ||||| |||||||||||| |||| || ||||||||||| ||||| ||||||||    
T  15813245 aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 15813306  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 19357703 - 19357642
Alignment:
Q  71 acatcagattttgttgaatatcgtccttccattgcatattctggcgacatatatccgctgca 132  Q
    |||||||| ||||||||| |   ||||||||||||||||||||| ||||| ||||| |||||    
T  19357703 acatcagactttgttgaacaaattccttccattgcatattctggagacatgtatccactgca 19357642  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 15703735 - 15703799
Alignment:
Q  278 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatg 342  Q
    |||||||| ||||| |||||||||||| |||| || ||||| |||| |||||| || ||||||||    
T  15703735 aaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctatg 15703799  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 2662470 - 2662577
Alignment:
Q  257 ccaaatattctagccatgccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagcc 356  Q
    ||||| ||||| ||||| || || || || ||||| |||||||||||  |||| |  ||||||||||| |||||||||||||||||||||||| | || |    
T  2662470 ccaaacattcttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtc 2662569  T
Q  357 ttgaatct 364  Q
    ||||||||    
T  2662570 ttgaatct 2662577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 2672742 - 2672709
Alignment:
Q  99 ccattgcatattctggcgacatatatccgctgca 132  Q
    |||||||||||||||| |||||||||||||||||    
T  2672742 ccattgcatattctggagacatatatccgctgca 2672709  T

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Target: scaffold0090 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 8284 - 8321
Alignment:
Q  263 attctagccatgccgaaatctgagattttgggattcat 300  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  8284 attctagccatgccaaaatctgaaattttgggattcat 8321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 47607412 - 47607375
Alignment:
Q  263 attctagccatgccgaaatctgagattttgggattcat 300  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  47607412 attctagccatgccaaaatctgagattttaggattcat 47607375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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