View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11279_high_14 (Length: 423)

Name: NF11279_high_14
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11279_high_14
NF11279_high_14
[»] chr1 (14 HSPs)
chr1 (14-402)||(27985009-27985400)
chr1 (330-382)||(48565125-48565177)
chr1 (333-395)||(12553246-12553308)
chr1 (333-395)||(41677112-41677174)
chr1 (351-395)||(24889192-24889236)
chr1 (330-406)||(33844658-33844734)
chr1 (330-406)||(33949244-33949320)
chr1 (339-397)||(4611217-4611276)
chr1 (333-395)||(9769561-9769623)
chr1 (333-395)||(9976365-9976427)
chr1 (330-395)||(2903005-2903070)
chr1 (330-382)||(195109-195161)
chr1 (339-391)||(18646743-18646794)
chr1 (330-390)||(19866532-19866592)
[»] chr2 (7 HSPs)
chr2 (333-397)||(4529744-4529808)
chr2 (334-395)||(14307676-14307737)
chr2 (333-395)||(12206550-12206612)
chr2 (330-395)||(25463244-25463309)
chr2 (333-397)||(30471954-30472016)
chr2 (330-395)||(39334859-39334924)
chr2 (339-395)||(1244621-1244677)
[»] chr7 (6 HSPs)
chr7 (330-387)||(39524747-39524804)
chr7 (339-395)||(3246476-3246532)
chr7 (331-395)||(13905989-13906053)
chr7 (338-395)||(35195895-35195952)
chr7 (332-397)||(38328547-38328612)
chr7 (339-395)||(35498449-35498505)
[»] chr6 (3 HSPs)
chr6 (346-400)||(13094507-13094561)
chr6 (331-395)||(9422885-9422950)
chr6 (330-395)||(26669637-26669702)
[»] chr5 (5 HSPs)
chr5 (330-395)||(27006392-27006457)
chr5 (330-395)||(28537187-28537252)
chr5 (331-395)||(40384303-40384367)
chr5 (333-376)||(7147000-7147043)
chr5 (330-366)||(35813221-35813257)
[»] chr4 (6 HSPs)
chr4 (330-395)||(55677157-55677222)
chr4 (331-395)||(49039424-49039488)
chr4 (333-382)||(47416533-47416582)
chr4 (357-397)||(56865-56905)
chr4 (331-395)||(33359869-33359933)
chr4 (330-382)||(41492477-41492529)
[»] chr3 (3 HSPs)
chr3 (339-397)||(6054212-6054270)
chr3 (339-395)||(21248977-21249033)
chr3 (343-395)||(32080107-32080159)
[»] scaffold0119 (1 HSPs)
scaffold0119 (330-395)||(1091-1156)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 27985400 - 27985009
Alignment:
Q  14 agagaaatgacgataaattgcttctcagatccagtattatataattttagagacattaaagctgaaataagaaaataatgttgattccttcttatagaga 113  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27985400 agagaaatgacgataaattgcttctcagatccaatattatataattttagagacattaaagctgaaataagaaaataatgttgattccttcttatagaga 27985301  T
Q  114 actgttgagaaaagagaagaaattcagagaagcaccgatgttggaaagaaatatgatggtgcatggtggcaaagagaacattaggttttgaaagcacaat 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27985300 actgttgagaaaagagaagaaattcagcgaagcaccgatgttggaaagaaatatgatggtgcatggtggcaaagagaacattaggttttgaaagcacaat 27985201  T
Q  214 aggttataccatttgggaattggtttttaatctgggtactggtttttatcgttttaatgaaatggattagggctaatttatatgcaaatgaatttggagg 313  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27985200 aggttataccatttgggaattggtttttaacctgggtactggtttttatagttttaatgaaatgtattagggctaatttatatgcaaatgaatttggagg 27985101  T
Q  314 ---nnnnnnnnnnnnnnnncaagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaactctgatc 402  Q
                       ||||||| ||||| |||||||||||||||||| ||||||||||||| |||||| ||| |||||||||| ||||    
T  27985100 tttttttttttttttttgtcaagtagtttagtagctagatttcaccttttttaaagtaaataaatagagtgtccggggttcgaactccgatc 27985009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 48565125 - 48565177
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgt 382  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  48565125 caagtagcttagtgtctagaattcacctttttcaaagtaaataagtggggtgt 48565177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 12553308 - 12553246
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| ||| |||| ||| ||||||||    
T  12553308 gtagcctagtggctagaattcacctttttcaaagtgaataagtggggtgtccggggttcgaac 12553246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 41677174 - 41677112
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||| ||||||||||| |||||||||||||| || ||||| ||| |||| ||||||||||||    
T  41677174 gtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggagttcgaac 41677112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 24889236 - 24889192
Alignment:
Q  351 ttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||    
T  24889236 ttcacctttttcaaagtgaataagtggggtgttcggagttcgaac 24889192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 33844734 - 33844658
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaactctgatccttg 406  Q
    |||||||  ||||||||| | ||||||||||||||||| ||||| ||| |||| ||| |||||||| | ||||||||    
T  33844734 caagtagtctagtggctataattcacctttttcaaagtgaataagtggggtgtccggggttcgaaccccgatccttg 33844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 33949244 - 33949320
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaactctgatccttg 406  Q
    |||||||  ||||||||| | ||||||||||||||||| ||||| ||| |||| ||| |||||||| | ||||||||    
T  33949244 caagtagtctagtggctataattcacctttttcaaagtgaataagtggggtgtccggggttcgaaccccgatccttg 33949320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 4611217 - 4611276
Alignment:
Q  339 tagtggctagatttcaccttt-ttcaaagtaaataaatggagtgttcggagttcgaactc 397  Q
    ||||||||||| ||||||||| ||||| |||||||| ||| |||| ||||||||||||||    
T  4611217 tagtggctagaattcacctttattcaaggtaaataagtggggtgtccggagttcgaactc 4611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 9769561 - 9769623
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||||||||| |||| |||||||||||||| || ||||| ||| |||| ||| ||||||||    
T  9769561 gtagcttagtggttagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaac 9769623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 9976365 - 9976427
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||| ||||||||||| ||||| |||||||| || ||||| ||| |||| ||||||||||||    
T  9976365 gtagcgtagtggctagaattcacttttttcaaggtgaataagtggggtgtccggagttcgaac 9976427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 2903005 - 2903070
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||| | ||||||||||| ||| |||||||||| || ||||| ||| |||||||| ||||||||    
T  2903005 caagtaacctagtggctagaattctcctttttcaaggtgaataagtggggtgttcggggttcgaac 2903070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 195161 - 195109
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgt 382  Q
    ||||||||||||||| |||| |||||||||||||| || ||||| ||| ||||    
T  195161 caagtagcttagtggttagaattcacctttttcaaggtgaataagtggggtgt 195109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 18646794 - 18646743
Alignment:
Q  339 tagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttc 391  Q
    |||||| |||| |||||||||||||||| |||||| ||| |||||||||||||    
T  18646794 tagtggttagaattcacctttttcaaagaaaataagtgg-gtgttcggagttc 18646743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 19866592 - 19866532
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagtt 390  Q
    ||||||| |||||||||||| ||||||||||| || || ||||| ||| |||| |||||||    
T  19866592 caagtagtttagtggctagaattcaccttttttaaggtgaataagtggggtgtccggagtt 19866532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 4529744 - 4529808
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaactc 397  Q
    |||||||||| |||| | ||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  4529744 gtagcttagttgctaaaattcacctttttcaaagtgaataagtggggtgttcggagttcgaactc 4529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 14307676 - 14307737
Alignment:
Q  334 tagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||||||||||||| ||||| ||||| ||||| ||||| ||| |||||||| ||||||||    
T  14307676 tagcttagtggctagaattcactttttttaaagtgaataagtggggtgttcggggttcgaac 14307737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 12206612 - 12206550
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||| ||||||||||| |||||||||||||| || |||||  || |||||||| ||||||||    
T  12206612 gtagcctagtggctagaattcacctttttcaaggtgaataagcggggtgttcggggttcgaac 12206550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 25463244 - 25463309
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||||| |||||| |||| ||||  |||||||| || |||||| || |||||||||||||||||    
T  25463244 caagtagcctagtggttagaattcatttttttcaaggtgaataaaaggggtgttcggagttcgaac 25463309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 30471954 - 30472016
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaactc 397  Q
    |||| |||||||||||| |||||||| |  ||||| |||||||||| |||||||||||| |||||    
T  30471954 gtagtttagtggctagaattcaccttat--aaagtgaataaatggaatgttcggagttcaaactc 30472016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 39334859 - 39334924
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||||  ||||||||||| ||||||||||||||||| ||||| |||  |||  |||||||||||    
T  39334859 caagtagtctagtggctagaattcacctttttcaaagtgaataagtgggatgtctggagttcgaac 39334924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 1244677 - 1244621
Alignment:
Q  339 tagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||||||| |||||||||||||| || ||||| ||| |||| ||| ||||||||    
T  1244677 tagtggctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaac 1244621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 39524804 - 39524747
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcgga 387  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||    
T  39524804 caagtaacttagtggatagaattcacctttttcaaagtaaataaatgaggtgttcgga 39524747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 3246476 - 3246532
Alignment:
Q  339 tagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||| |||| ||||||||||||||||||||||| | | |||||||||||||||||    
T  3246476 tagtggttagaattcacctttttcaaagtaaataagtagggtgttcggagttcgaac 3246532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 13906053 - 13905989
Alignment:
Q  331 aagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||| ||||||| |||| |||| |||||| ||||||||||| ||| |||||||||||||||||    
T  13906053 aagtagtttagtggttagaattcaacttttttaaagtaaataagtggggtgttcggagttcgaac 13905989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 35195952 - 35195895
Alignment:
Q  338 ttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||| |||||  ||||||||||||| || ||||||||| |||||||| ||||||||    
T  35195952 ttagtgactagaagtcacctttttcaaggtgaataaatggggtgttcggggttcgaac 35195895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 38328547 - 38328612
Alignment:
Q  332 agtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaactc 397  Q
    ||||| ||||||| |||| || ||||||||||| || ||||||||| ||||| || ||||||||||    
T  38328547 agtagtttagtggttagaattaacctttttcaaggtgaataaatggggtgtttggggttcgaactc 38328612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 35498505 - 35498449
Alignment:
Q  339 tagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||||||| ||||||||||||||||| ||||| ||| |||| || |||| ||||    
T  35498505 tagtggctagaattcacctttttcaaagtgaataagtggggtgtccgaagtttgaac 35498449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 13094561 - 13094507
Alignment:
Q  346 tagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaactctga 400  Q
    |||| |||| |||||||||||||||||| |||||||||||| |||||||| ||||    
T  13094561 tagaattcatctttttcaaagtaaataagtggagtgttcggggttcgaaccctga 13094507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 9422950 - 9422885
Alignment:
Q  331 aagtagcttagtggctagatttcacctttt-tcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||||||||||||||| |||||||||| |||| || ||||| ||| |||| ||| ||||||||    
T  9422950 aagtagcttagtggctagaattcaccttttatcaaggtgaataagtggggtgtccggtgttcgaac 9422885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 26669637 - 26669702
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||| |||||||||||| |||||||||||||| || ||||| ||| ||||  || ||||||||    
T  26669637 caagtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaac 26669702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 27006457 - 27006392
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||||| ||  ||||||| |||||||||||||| || ||||| |||||||| ||||||||||||    
T  27006457 caagtagcctaacggctagaattcacctttttcaaggtgaataagtggagtgtccggagttcgaac 27006392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 28537252 - 28537187
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||||| ||||||||||| |||||| |||||||||| ||||| ||| |||| ||| ||||||||    
T  28537252 caagtagcctagtggctagaattcaccattttcaaagtgaataagtggggtgtccggggttcgaac 28537187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 40384367 - 40384303
Alignment:
Q  331 aagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    |||||| |||||||||||| ||||||||||| || || ||||| ||| |||| ||||||||||||    
T  40384367 aagtagtttagtggctagaattcaccttttttaaggtgaataagtggggtgtccggagttcgaac 40384303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 7147000 - 7147043
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatg 376  Q
    |||||||| |||||||| |||||||||||||| |||||||||||    
T  7147000 gtagcttaatggctagaattcacctttttcaatgtaaataaatg 7147043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 35813221 - 35813257
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaag 366  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  35813221 caagtagcctagtggctagaattcacctttttcaaag 35813257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 55677222 - 55677157
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||| ||||||| |||| ||||| | ||||||||| ||||| |||||||| ||||||||||||    
T  55677222 caagtagtttagtggttagaattcacttatttcaaagtgaataagtggagtgtccggagttcgaac 55677157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 49039424 - 49039488
Alignment:
Q  331 aagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||| ||||||||||| |||||||||||||| || ||||| ||| |||| ||| ||||||||    
T  49039424 aagtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaac 49039488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 47416582 - 47416533
Alignment:
Q  333 gtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgt 382  Q
    |||||||||||| |||| ||||||||||||||||| ||||| ||| ||||    
T  47416582 gtagcttagtggttagaattcacctttttcaaagtgaataagtggggtgt 47416533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 56865 - 56905
Alignment:
Q  357 tttttcaaagtaaataaatggagtgttcggagttcgaactc 397  Q
    |||||||| || ||||||||| |||||||||||||||||||    
T  56865 tttttcaaggtgaataaatggggtgttcggagttcgaactc 56905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 33359933 - 33359869
Alignment:
Q  331 aagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||| ||||||||||| |||||||||||||| || ||||| ||| |||| | | ||||||||    
T  33359933 aagtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccagggttcgaac 33359869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 41492477 - 41492529
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgt 382  Q
    |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  41492477 caagtaacctagtggctagaattcacctttttcaaggtaaataagtggggtgt 41492529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 6054212 - 6054270
Alignment:
Q  339 tagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaactc 397  Q
    |||||| |||| |||||||||||||| || ||||| ||  |||||||||||||||||||    
T  6054212 tagtggttagaattcacctttttcaaggtgaataagtgaggtgttcggagttcgaactc 6054270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 21248977 - 21249033
Alignment:
Q  339 tagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||||||| |||||||||||||| || ||||| ||| |||||| | ||||||||    
T  21248977 tagtggctagaattcacctttttcaaggtgaataagtggggtgttcagggttcgaac 21249033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 32080159 - 32080107
Alignment:
Q  343 ggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||| |||||||||||||| || ||||| ||| |||||||| ||||||||    
T  32080159 ggctagaattcacctttttcaaggtgaataagtggggtgttcggggttcgaac 32080107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 1156 - 1091
Alignment:
Q  330 caagtagcttagtggctagatttcacctttttcaaagtaaataaatggagtgttcggagttcgaac 395  Q
    ||||||| |||||||||||| |||||||||||||| || ||||| ||| ||||  || ||||||||    
T  1156 caagtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaac 1091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University