View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_16 (Length: 412)
Name: NF11279_high_16
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 36472552 - 36472930
Alignment:
| Q |
17 |
acatcactaataatgtgagaaaagaaaagtaattgaattagaccaaaatcatgtcggtgctagaaaccgaatgatccttcaatttgaagtattggtgcgt |
116 |
Q |
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| T |
36472552 |
acatcactaataatgtgagaaaagaaaagtaattgaattagaccaaaatcatatcggtgctagaaactgaatgatccttcaatttgaagtattggtgcgt |
36472651 |
T |
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| Q |
117 |
tttatagattaattagttgcatacaactttgagtttctagctatttaattcttctatatagatctataaattatatatatacctgaagtagattcaatat |
216 |
Q |
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| T |
36472652 |
tttatagattaattagttgcatacaactttgagtttctagctatttaattcttctatatagatctataaattatatatatacctgaagtagattcaatat |
36472751 |
T |
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| Q |
217 |
ccaatatatcaacgagcaagttgttgtgtaattctgtttcaaaacaaaagcataaataatcatccttccttgtttactcatgtatacaagaatatggnnn |
316 |
Q |
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| T |
36472752 |
ccaatatatcaacgagcaagttgttgtgtaattctgtttcaaaacaaaagcataaataatcatccttccttgtttactcatgtatacaagaatatgg-aa |
36472850 |
T |
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| Q |
317 |
nnnnnntatcaactaattttgagttgaatatatagctcatgagatatatacttacttttcctatctgtaatgcaagtatc |
396 |
Q |
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| T |
36472851 |
aaaaaatatcaactaattttgagttgaatatatagctcatgagatatatacttacttttcctatctgtaatgcaagtatc |
36472930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 36463795 - 36463865
Alignment:
| Q |
325 |
tcaactaattttgagttgaatatatagctcatgagatatatacttacttttcctatctgtaatgcaagtatc |
396 |
Q |
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| T |
36463795 |
tcaaataattgtgagttgagt-tatagctcatgagatatatactaacttttcctatctgtaatgcaagtatc |
36463865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 36463599 - 36463672
Alignment:
| Q |
196 |
tacctgaagtagattcaatatccaatatatcaacgagcaagttgttgtgtaattctgtttcaaaacaaaagcata |
270 |
Q |
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|||||||||||||||||||||||||||| || ||||||||| |||| ||| |||| ||||||||||||||||| |
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| T |
36463599 |
tacctgaagtagattcaatatccaatatgccacagagcaagttattgtataactctg-ttcaaaacaaaagcata |
36463672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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