View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_18 (Length: 386)
Name: NF11279_high_18
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 34976662 - 34977047
Alignment:
| Q |
18 |
gaggagacccagattctccataagccaactctgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976662 |
gaggagacccagattctccataagccaactctgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgat |
34976761 |
T |
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| Q |
118 |
cacttgcccttcattgacaaaaacaataacaaattaactgcagttcattgatgaagtaaagtcctaagagatctcagtctttggataaagttttatgaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
34976762 |
cacttgcccttcattgacaaaaacaataacaaattaactgcagttcattgatgaagtaaagtcctaagagatctcagtcttcggatgaagttttatgaaa |
34976861 |
T |
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| Q |
218 |
cagagacacggatgttggacacgataaaacactgacaatgaaaataattgtaacacacatatcaatcacccagacatatcttcaatctaaagtgtttgta |
317 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34976862 |
cagagacacggatgttggaaacgataaaacactgacaatgaaaataattgtaacacacatatcaatcacccagacatatcttcaatctaaagtgtctgta |
34976961 |
T |
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| Q |
318 |
cg-----------------atatacaaaaatcacatttgtgtaaataaaagatctattttaatatgatactatcattgtatagttc |
386 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976962 |
cgataacttaaccaatacaatatacaaaaatcacatttgtgtaaataaaagatctattttaatatgatactatcattgtatagttc |
34977047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 3496379 - 3496488
Alignment:
| Q |
18 |
gaggagacccagattctccataagccaactctgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgat |
117 |
Q |
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||||||| |||||||| |||||||| ||||| || || || ||||||| ||||||||||| |||||||||||||| || || |||||||| ||||| || |
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| T |
3496379 |
gaggagaaccagattcaccataagctaactcaggtggaatggtgaaaagagcattttcacctttcttcatggttttaattccctcatcccatcctttaat |
3496478 |
T |
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| Q |
118 |
cacttgccct |
127 |
Q |
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||||||||| |
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| T |
3496479 |
aacttgccct |
3496488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 18848953 - 18849054
Alignment:
| Q |
26 |
ccagattctccataagccaactctgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgatcacttgcc |
125 |
Q |
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|||||||| |||||||| | ||| || || || ||||| | ||||||||||| |||||||||||||| |||||||||||||| |||| || ||||||| |
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| T |
18848953 |
ccagattcaccataagctagctcgggagggatggtgaagagtgcattttcacctttcttcatggttttaataccttcatcccatccttgaattacttgcc |
18849052 |
T |
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| Q |
126 |
ct |
127 |
Q |
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|| |
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| T |
18849053 |
ct |
18849054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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