View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11279_high_20 (Length: 382)

Name: NF11279_high_20
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11279_high_20
NF11279_high_20
[»] chr5 (6 HSPs)
chr5 (19-382)||(29712051-29712414)
chr5 (94-360)||(29688295-29688558)
chr5 (99-364)||(29696404-29696669)
chr5 (230-319)||(179357-179446)
chr5 (237-361)||(9120069-9120193)
chr5 (90-135)||(42562181-42562226)
[»] chr4 (8 HSPs)
chr4 (232-371)||(48147334-48147473)
chr4 (230-267)||(48863570-48863607)
chr4 (290-379)||(49043781-49043870)
chr4 (291-350)||(48864395-48864454)
chr4 (277-363)||(7790426-7790512)
chr4 (277-319)||(7878729-7878771)
chr4 (230-267)||(49040871-49040908)
chr4 (287-359)||(48853037-48853109)
[»] chr8 (1 HSPs)
chr8 (292-350)||(15349244-15349302)
[»] chr1 (3 HSPs)
chr1 (233-272)||(24310521-24310560)
chr1 (233-267)||(24367473-24367507)
chr1 (233-267)||(24416083-24416117)


Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 29712414 - 29712051
Alignment:
Q  19 ataattatttctcttattgcctggcccgtgaaaattccaaagtagagccgttcttaaatggggctattcacttcttaaacggggctattcactggttggc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29712414 ataattatttctcttattgcctggcccgtgaaaattccaaagtagagccgttcttaaatggggctattcacttcttaaatggggctattcactggttggc 29712315  T
Q  119 tctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccagctgatataacatctgctcct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712314 tctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccagctgatataacatctgctcct 29712215  T
Q  219 agtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaataca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712214 agtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaataca 29712115  T
Q  319 atgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattattt 382  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  29712114 atgtgacatcttcttggactaagactcttgttttgtcttttgatggaattcccagccattattt 29712051  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 94 - 360
Target Start/End: Original strand, 29688295 - 29688558
Alignment:
Q  94 taaacggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgacttt 193  Q
    |||| |||| |||||||||||||||| ||  |||||||| ||||| |||||||||| |||| | |||||||| | ||||| | ||| |||||||| ||||    
T  29688295 taaatggggttattcactggttggcttttcattatgatagatcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgccttt 29688394  T
Q  194 gccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatg-gcacatgataatggtacagt 292  Q
    |||   || |||||    || ||||||   |||||||||||||||| |||| |||||||||||||||||||  |||||| |||| |||||||||||||||    
T  29688395 gcctattggtataaataatggtcctag---agtgtatgatttatggctattcagaggatgtctcagtctatttgatatgtgcac-tgataatggtacagt 29688490  T
Q  293 tgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttg 360  Q
    |||||||||||||||| ||||||||||||||  ||| |||||||| |||| ||| ||| | |||||||    
T  29688491 tgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttg 29688558  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 99 - 364
Target Start/End: Original strand, 29696404 - 29696669
Alignment:
Q  99 ggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccag 198  Q
    ||||||||||||||||||||| || || |||||||||||| |  ||||||| ||| || |||||||||  ||||| | ||||||||||||  |||||||     
T  29696404 ggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaacttctagagttgcgtttgccaa 29696503  T
Q  199 ctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaat 298  Q
     ||| ||||    || |||||| |  | ||||||||||||||| | |||||||||||||  ||||||| ||||    | |||||  | |||| || ||||    
T  29696504 atgagataatcaatggtcctagcagggcgtatgatttatgggtgtatagaggatgtctcgctctatggcatattttgcctgatagagttacatttcaaat 29696603  T
Q  299 atgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatgg 364  Q
    |||||||||||||||||||||||||  ||| ||||||||||||| ||||||  |||||||||||||    
T  29696604 atgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgtcctgtcttttgatgg 29696669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 179357 - 179446
Alignment:
Q  230 tgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaa 319  Q
    |||| ||||||||||| ||  || ||||||| |||||| |||||   ||||||||| |||||||||||||||||||||| || |||||||    
T  179357 tgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaa 179446  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 361
Target Start/End: Original strand, 9120069 - 9120193
Alignment:
Q  237 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 336  Q
    ||||||||| ||| || ||||||| |||||| |||||    || ||||| |||||||||||||||||||||| || ||||||| |||   || |||||||    
T  9120069 tgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttgga 9120168  T
Q  337 ctaagattcttgttttgtcttttga 361  Q
      || | ||||||||||||| ||||    
T  9120169 agaaaactcttgttttgtctattga 9120193  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 42562226 - 42562181
Alignment:
Q  90 ttcttaaacggggctattcactggttggctctttgttatgatatat 135  Q
    ||||| || |||||||||||||||||||||||| || |||||||||    
T  42562226 ttcttcaatggggctattcactggttggctcttcgtcatgatatat 42562181  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 371
Target Start/End: Complemental strand, 48147473 - 48147334
Alignment:
Q  232 atttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttc 331  Q
    |||| ||||||||| ||  || ||||||||||  || |||||  ||||| ||| | | ||||||||||||||||||| || ||||||| |||   || ||    
T  48147473 atttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 48147374  T
Q  332 ttggactaagattcttgttttgtcttttgatggaattccc 371  Q
    ||||||||||| ||||  ||||||| ||||||| ||||||    
T  48147373 ttggactaagactcttaatttgtctattgatggcattccc 48147334  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 48863570 - 48863607
Alignment:
Q  230 tgatttatgggtatttagaggatgtctcagtctatggg 267  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48863570 tgatttatgggtatttagaggatctctcagtctatggg 48863607  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 49043870 - 49043781
Alignment:
Q  290 agttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcatta 379  Q
    ||||||||||||||||||| || ||||||| |||   || || |||||||||| ||||||||| ||| ||||||  ||||||| ||||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcatta 49043781  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 48864395 - 48864454
Alignment:
Q  291 gttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 350  Q
    |||||||||||||||||| || ||||||| |||   || |||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgtt 48864454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 363
Target Start/End: Original strand, 7790426 - 7790512
Alignment:
Q  277 atgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatg 363  Q
    ||||||||| |||| ||||||||||||||||| || ||||||| |||   || ||||||||||| | ||||||| | ||| ||||||    
T  7790426 atgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatg 7790512  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 7878729 - 7878771
Alignment:
Q  277 atgataatggtacagttgaaatatgggtgatggaaaaatacaa 319  Q
    ||||||||| |||||||||||||||||||||| || |||||||    
T  7878729 atgataatgatacagttgaaatatgggtgatgaaagaatacaa 7878771  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 49040908 - 49040871
Alignment:
Q  230 tgatttatgggtatttagaggatgtctcagtctatggg 267  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  49040908 tgatttatgggtatttaaaggatttctcagtctatggg 49040871  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 48853037 - 48853109
Alignment:
Q  287 tacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtctttt 359  Q
    |||||||||||||||||| ||| || ||||||| |||   || ||||||||||||| ||||||| | ||||||    
T  48853037 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttctttt 48853109  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 15349244 - 15349302
Alignment:
Q  292 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 350  Q
    ||||||||||||||||| || ||||||| ||||  ||||||||||| ||||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt 15349302  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 24310521 - 24310560
Alignment:
Q  233 tttatgggtatttagaggatgtctcagtctatgggatatg 272  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24310521 tttatgggtatttagaggatttctcagtctatgggttatg 24310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 24367473 - 24367507
Alignment:
Q  233 tttatgggtatttagaggatgtctcagtctatggg 267  Q
    |||||||||||||||||||| ||||||||||||||    
T  24367473 tttatgggtatttagaggatttctcagtctatggg 24367507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 24416083 - 24416117
Alignment:
Q  233 tttatgggtatttagaggatgtctcagtctatggg 267  Q
    |||||||||||||||||||| ||||||||||||||    
T  24416083 tttatgggtatttagaggatttctcagtctatggg 24416117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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