View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_21 (Length: 341)
Name: NF11279_high_21
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 18103983 - 18103649
Alignment:
| Q |
1 |
gtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttggaataatgtagtcaccaac |
100 |
Q |
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| T |
18103983 |
gtacaaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttggaataatgtagtcaccaac |
18103884 |
T |
|
| Q |
101 |
ttcaacatctgtttctgctttacgaggaagtaataagggaactgatggatgtaaacgaagagtttcttttataactgcttgcatgtatggtaacttagct |
200 |
Q |
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| T |
18103883 |
ttcaacatctgtttctgctttacgaggaagtaataagggaactgatggatgtaaacgaagagtttcttttataactgcttgcatgtatggtaacttagct |
18103784 |
T |
|
| Q |
201 |
atgtctgtttcttgtattggaataccttttccaacaacttgttcaagttctttttgtacttttgacatgatttctggattttgcattaactctgccattg |
300 |
Q |
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| T |
18103783 |
atgtctgtttcttgtattggaatacctttgccaacaacttgttcaagttctttttgtacttttgacatgatttctggattttgcattaactctgccattg |
18103684 |
T |
|
| Q |
301 |
cccattctagagtgtatgttattgtctctgctcct |
335 |
Q |
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|||||||||| |||||||||||||| |||| |||| |
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| T |
18103683 |
cccattctagtgtgtatgttattgtgtctgttcct |
18103649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 18093971 - 18093641
Alignment:
| Q |
5 |
aaaaacattagcattatcccatttatttgggtctctaccaataacccatgcattgatcaaaacttgtgcatcttttggaataatgtagtcaccaacttca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||||| |||| |
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| T |
18093971 |
aaaaacattagcattatcccatttatttgggtctctaccaatcacccatgcattaaccaacacttgtgcatcttttggaataatgtattcaccaatttca |
18093872 |
T |
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| Q |
105 |
acatctgtttctgctttacgaggaagtaataagggaactgatggatgtaaacgaagagtttcttttataactgcttgcatgtatggtaacttagctatgt |
204 |
Q |
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| T |
18093871 |
acatcgatttctgctttgcgaggtaataacaagggaactggtggatgtaaacgaaatgtttcttttataactgcttgcatgtatggtaacttagctatgt |
18093772 |
T |
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| Q |
205 |
ctgtttcttgtattggaataccttttccaacaacttgttcaagttctttttgtacttttgacatgatttctggattttgcattaactctgccattgccca |
304 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
18093771 |
ctgtttcttgtattggaatacctttgccaacaacttgttcaagttccttttgtacttttaacatgatttctggattgtgcattaactctgccattgccca |
18093672 |
T |
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| Q |
305 |
ttctagagtgtatgttattgtctctgctcct |
335 |
Q |
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|||||||||||||||| |||| |||| |||| |
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| T |
18093671 |
ttctagagtgtatgttgttgtgtctgttcct |
18093641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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