View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_34 (Length: 263)
Name: NF11279_high_34
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3674925 - 3674667
Alignment:
| Q |
1 |
gctcggcaatggtagccgtagacgtctcactgatcaaatctcgtgtgttatttgtttgcgttttt-cttttgagccgaggttgatgttctaacataatac |
99 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3674925 |
gctcggtaatggtagccgtagacgtctcactgatcaaatctcgtgtgttatttgtttgcgttttttcttttgagccgaggttgatgttctaacataatac |
3674826 |
T |
|
| Q |
100 |
aaacaggatactctgctactatgccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674825 |
aaacaggatactctgctactatgccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgt |
3674726 |
T |
|
| Q |
200 |
aatatacagagatttcaaagcttcaaatatcttactagactcggtatgttcttctctct |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3674725 |
aatatacagagatttcaaagcttcaaatatcttactagactcggtatgttcttttctct |
3674667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 48553545 - 48553699
Alignment:
| Q |
96 |
atacaaacaggatactctgctactatgccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaac |
195 |
Q |
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|||||| |||||||||||||||| | ||||||||||| || |||||||| ||||| || || ||||| || |||| || ||||||||||||||||||| |
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| T |
48553545 |
atacaatcaggatactctgctacattaccatggtcaaccagaatgaaaattgcattaggtgcagctaagggactagctttccttcatgaagcagataaac |
48553644 |
T |
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| Q |
196 |
ctgtaatatacagagatttcaaagcttcaaatatcttactagactcggtatgttc |
250 |
Q |
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| T |
48553645 |
ctgtaatttatagggatttcaaaacttcaaatatattactggactcggtatgttc |
48553699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 44196556 - 44196483
Alignment:
| Q |
177 |
cttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaatatcttactagactcggtatgttc |
250 |
Q |
| |
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||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||| |||||||||||||| |
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| T |
44196556 |
cttcatgaagcagataaacttgtaatatatagggatttcaaaacttcaaatatattactggactcggtatgttc |
44196483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 18327607 - 18327485
Alignment:
| Q |
123 |
ccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagctt |
222 |
Q |
| |
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|||||||||||||| |||||||| || | |||||||| ||||| ||||| |||||||||||||| || |||| || || | |||||||||||||||| |
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| T |
18327607 |
ccatggtcaacaagaatgaaaattgctgttggagctgcaaaaggtttagcctttcttcatgaagctgagcaaccagttatttttagagatttcaaagctt |
18327508 |
T |
|
| Q |
223 |
caaatatcttactagactcggta |
245 |
Q |
| |
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|||| ||||| ||||||||||| |
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| T |
18327507 |
caaacatcttgttagactcggta |
18327485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 19965817 - 19965890
Alignment:
| Q |
177 |
cttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaatatcttactagactcggtatgttc |
250 |
Q |
| |
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||||||||||||||||||| ||||||||| || ||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
19965817 |
cttcatgaagcagataaacttgtaatatatagggatttcaaaaattcaaatatattactggactcggtatgttc |
19965890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 51938791 - 51938673
Alignment:
| Q |
123 |
ccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagctt |
222 |
Q |
| |
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|||||||||||||| |||||||| || | |||||||| ||||| |||| ||| | ||||| ||| | ||||| || || |||||||||||||||| || |
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| T |
51938791 |
ccatggtcaacaagaatgaaaattgctgttggagctgcaaaaggtctagcttttttacatgatgcaaagaaaccagtcatctacagagatttcaaaggtt |
51938692 |
T |
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| Q |
223 |
caaatatcttactagactc |
241 |
Q |
| |
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||||||||||| ||||||| |
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| T |
51938691 |
caaatatcttattagactc |
51938673 |
T |
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