View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_37 (Length: 250)
Name: NF11279_high_37
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31730511 - 31730748
Alignment:
| Q |
1 |
atgtaggaggcttttttg-aaagttatggatgttcttaaaaagcaaggatgccctcgctttccaatgatcaagaccaaggtggctaaaggaaggtgatat |
99 |
Q |
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| T |
31730511 |
atgtaggaggcttttttggaaagttatggatgttcttaaaaagcaaagatgcccttgctttccaatgatcaagaccaaggtggctaaaggaaggtgatat |
31730610 |
T |
|
| Q |
100 |
aagttcaagtttccttcatggttatgttaaatttaggagaaaagtaaaggccgttaaagtattgagaacacgagacaggtggagataaggaaagtgacgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
31730611 |
aagttcaagtttccttcatggttatgttaaatttaggagaaaagtaaaggccgttaaagtattgagaacacgagactggtggagataaggaaagtgaggt |
31730710 |
T |
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| Q |
200 |
aagttcagtcttttttcgtttatttttgtgattctttc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31730711 |
aagttcagtcttttttcgtttatttttgtgattctttc |
31730748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 6495760 - 6495993
Alignment:
| Q |
1 |
atgtaggaggcttttttgaaagttatggatgttcttaaaaagcaaggatgccctcgctttccaatgatcaagaccaaggtggctaaaggaaggtgatata |
100 |
Q |
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|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6495760 |
atgtaggaggttttttggaaaggtatggatgttcttaaaaagcaaggatgccctcactttccaatgatcaagatcaaggtggctaaaggaaggtgatata |
6495859 |
T |
|
| Q |
101 |
agttcaagtttccttcatggttatgttaaatttaggagaaaagtaaaggccgttaaagtattgagaacacgagacaggtggagataaggaaagtgacgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||| | ||||||||||||||||| |
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| T |
6495860 |
agttcaagtttccttcatggttatgttaaatttaggagaaaagtaaatgccattaaagtattgagaacaccagagaggtgaacataaggaaagtgacgta |
6495959 |
T |
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| Q |
201 |
agttcagtcttttttcgtttatttttgtgattct |
234 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
6495960 |
agttcagttttttttcgtttatttttgtgattct |
6495993 |
T |
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