View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_39 (Length: 248)
Name: NF11279_high_39
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_39 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0246 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18532 - 18768
Alignment:
| Q |
1 |
aggtcataattcattataaacaaacttaacaaagagtttaagcttccaattaagctacaattaaaaaataaacgtcatgctatacgtcgaacacttacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18532 |
aggtcataattcattataaacaaacttaacaaagagtttaagcttccaattaagctacaattaaaaaataaacttcatgctatacgtcgaacacttacac |
18631 |
T |
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| Q |
101 |
ttcagaaacattaattctcttcaaaacacttgattattgaaagatattcatgtgaatttacactctctactgtgtgtgtgggacccatattatgtcaaga |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
18632 |
ttcagacacattaattctcttcaaaacacttgattattgaaagatattcatgtgaatttacactctctaatgtgtgtgtgggactcatattatgtcaaga |
18731 |
T |
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| Q |
201 |
gacacaccccaacaacactcatgcatgccttgttcat |
237 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
18732 |
gacacaccccaataacactcatgcatgccttgttcat |
18768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40480593 - 40480829
Alignment:
| Q |
1 |
aggtcataattcattataaacaaacttaacaaagagtttaagcttccaattaagctacaattaaaaaataaacgtcatgctatacgtcgaacacttacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40480593 |
aggtcataattcattataaacaaacttaacaaagagtttaagcttccaattaagctacaattaaaaaataaacttcatgctatacgtcgaacacttacac |
40480692 |
T |
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| Q |
101 |
ttcagaaacattaattctcttcaaaacacttgattattgaaagatattcatgtgaatttacactctctactgtgtgtgtgggacccatattatgtcaaga |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
40480693 |
ttcagacacattaattctcttcaaaacacttgattattgaaagatattcatgtgaatttacactctctaatgtgtgtgtgggactcatattatgtcaaga |
40480792 |
T |
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| Q |
201 |
gacacaccccaacaacactcatgcatgccttgttcat |
237 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
40480793 |
gacacaccccaataacactcatgcatgccttgttcat |
40480829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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