View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_48 (Length: 229)
Name: NF11279_high_48
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_48 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43435553 - 43435781
Alignment:
| Q |
1 |
tcggtcatgaattggatctcaatccttccataaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
100 |
Q |
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||||||||||||||||||| ||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435553 |
tcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
43435652 |
T |
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| Q |
101 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccagatttggatttagttttcagggtagct |
200 |
Q |
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| T |
43435653 |
ggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataagccgaatttggatttagttttcagggtagct |
43435752 |
T |
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| Q |
201 |
aagaaatttgagtcatcagggtatactct |
229 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
43435753 |
aagaaattcgagtcatcagggtatactct |
43435781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43443747 - 43443975
Alignment:
| Q |
1 |
tcggtcatgaattggatctcaatccttccataaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
100 |
Q |
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||||||||||||||||||| ||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43443747 |
tcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
43443846 |
T |
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| Q |
101 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccagatttggatttagttttcagggtagct |
200 |
Q |
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| T |
43443847 |
ggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataagccgaatttggatttagttttcagggtagct |
43443946 |
T |
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| Q |
201 |
aagaaatttgagtcatcagggtatactct |
229 |
Q |
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| T |
43443947 |
aagaaattcgagtcatcagggtatactct |
43443975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43427048 - 43427276
Alignment:
| Q |
1 |
tcggtcatgaattggatctcaatccttccataaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
100 |
Q |
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||||||||||||||||||| || ||| ||| ||||||||||||||||||| ||| |||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
43427048 |
tcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagctttacgagcatatgat |
43427147 |
T |
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| Q |
101 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccagatttggatttagttttcagggtagct |
200 |
Q |
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| T |
43427148 |
ggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatctacaaaggataagccagatttggatttagttttcagggtaact |
43427247 |
T |
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| Q |
201 |
aagaaatttgagtcatcagggtatactct |
229 |
Q |
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| T |
43427248 |
aagaaatttgagtcaacagggtatactct |
43427276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 21050 - 21244
Alignment:
| Q |
35 |
gatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcatataagccatcagttccagactgc |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
21050 |
gatatcgaggcagcttcaaaagaataagatgatggaggatgttgtcaagctttatgagcatatgatggatagttcatataagccatcagttctggattgc |
21149 |
T |
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| Q |
135 |
atcatgcttttaaagagcatctctgcaagctataagccagatttggatttagttttcagggtagctaagaaatttgagtcatcagggtatactct |
229 |
Q |
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| T |
21150 |
attatgcttttaaagagcacatctgcaagcgataagctggatttggatttagttttcagggtagctaagaaattcgagtaaacagggtatactct |
21244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 40186249 - 40186045
Alignment:
| Q |
1 |
tcggtcatgaattggatctcaatccttccataaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| | |||| ||||||||||||| |
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| T |
40186249 |
tcggtcatgaattggatctcaatacttccataaagatatcgaggcagcttcaagagaataggatgatggacgg---------gcttcatgagcatatgat |
40186159 |
T |
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| Q |
101 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccagatttggatttagttttcagggtagct |
200 |
Q |
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|||||||||||| ||||||||||||| |||||||| ||||||||||||| |||| ||| |||| || |||||| |||||||||| |||||||||||||| |
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| T |
40186158 |
ggatagttcatacaagccatcagttctggactgcattatgcttttaaagaacatcgctgaaagcgatgagccaggtttggatttatttttcagggtagct |
40186059 |
T |
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| Q |
201 |
aagaaatttgagtc |
214 |
Q |
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|| ||||| ||||| |
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| T |
40186058 |
aacaaattcgagtc |
40186045 |
T |
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