View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_49 (Length: 227)
Name: NF11279_high_49
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 30120626 - 30120829
Alignment:
| Q |
18 |
ggaaacaatcatttcctatggacaaaaggttatgtgtgggtgaggcggcaagataaaaatgtaaagttgcgaaattgggatg-------agagatgagag |
110 |
Q |
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| T |
30120626 |
ggaaacaatcatttcctatggacaaaaggttatgtgtgggtgaggcggcaagatgaaaatgtaaagttgcaaaattgggatgagagatgagagatgagag |
30120725 |
T |
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| Q |
111 |
acagccatgatttgcaaacgcacctgtaacgtagtacatacttcaccggcaacctcaataggatttctgttatcacttccggaagcagatgcaggcttct |
210 |
Q |
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| T |
30120726 |
acagccatgatttgcaaacgcacctgtaacgtaatacatacttcaccggcaacctcaataggatttctgttatcactttcggaagcagatgcacgcttct |
30120825 |
T |
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| Q |
211 |
tctc |
214 |
Q |
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|||| |
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| T |
30120826 |
tctc |
30120829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 29856660 - 29856531
Alignment:
| Q |
55 |
gggtgaggcggcaagataaaaatgtaaagttgcgaaattgggatgagagatgagagacagccatgatttgcaaacgcacctgtaacgtagtacatacttc |
154 |
Q |
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| T |
29856660 |
gggtgatgcagcaagatgaaaatgtgaagttga-aaatgaggatgagagatcatagaaatccataacttacagacgcgcttgcaacgtagtacagacttc |
29856562 |
T |
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| Q |
155 |
accggcaacctcaataggatttctgttatca |
185 |
Q |
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| T |
29856561 |
accggcaacctcatcaggatttcggttatca |
29856531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 29261011 - 29260814
Alignment:
| Q |
17 |
aggaaacaatcatttcctatggacaaaaggttatgtgtgggtgaggcggcaagataaaaatgtaaagttgcgaaattgggatgagagatgagagacagcc |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
29261011 |
aggaaacaataatttcctatggacaaaaggttatgtgtgggtgaggcggcaagatgaaaatgtaaagttgcaaaattgggatgagaaatgagagacagcc |
29260912 |
T |
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| Q |
117 |
atgatttgcaaacgcacctgtaacgtagtacatacttcaccggcaacctcaataggatttctgttatcacttccggaagcagatgcaggcttcttctc |
214 |
Q |
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| T |
29260911 |
atgatttgtaaatacacttgtaacgtagtacatacttcacgagcaacctctataggatctctgttatcacttccggaagcagatgcacgctttttctc |
29260814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 41311468 - 41311607
Alignment:
| Q |
48 |
tatgtgtgggtgaggcggcaagataaaaatgtaaagttgcgaaattgggatgagagatgagagacagccatgatttgcaaacgcacctgtaacgtagtac |
147 |
Q |
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| T |
41311468 |
tatgtgtggatgatgcagcaagttgaaaatgtgaagatgccaaatagggatcagagattagagagagccatgacttacagacgc--ctgcaacgtagtac |
41311565 |
T |
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| Q |
148 |
atacttcaccggcaacctcaataggatttctgttatcacttc |
189 |
Q |
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| T |
41311566 |
agacttcaccggcaacctcagcaggatttcggttatcacttc |
41311607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 21426120 - 21425978
Alignment:
| Q |
47 |
ttatgtgtgggtgaggcggcaagataaaaatgtaaagttgcgaaattgggatgagagatgagagacagccatgatttgcaaacgcacctgtaacgtagta |
146 |
Q |
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| T |
21426120 |
ttatgtgtgggagaggcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagacacacctgcagcgtagta |
21426021 |
T |
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| Q |
147 |
catacttcaccggcaacctcaataggatttctgttatcacttc |
189 |
Q |
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| T |
21426020 |
aagtcttcaccggcaacctcagaaggatttcctttatcacttc |
21425978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 7822656 - 7822582
Alignment:
| Q |
94 |
gggatgagagatgagagacagccatgatttgcaaacgcacctgtaacgtagtacatacttcaccggcaacctcaa |
168 |
Q |
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| T |
7822656 |
gggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaa |
7822582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 7813161 - 7813093
Alignment:
| Q |
100 |
agagatgagagacagccatgatttgcaaacgcacctgtaacgtagtacatacttcaccggcaacctcaa |
168 |
Q |
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| T |
7813161 |
agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaa |
7813093 |
T |
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