View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_50 (Length: 227)
Name: NF11279_high_50
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_50 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 52133773 - 52133569
Alignment:
| Q |
1 |
tatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgtctcttctgctggaattg |
100 |
Q |
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| T |
52133773 |
tatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaggaggaactcttgaacccaatagctcctgtctcttctgctggaattg |
52133674 |
T |
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| Q |
101 |
ctggctttcttcccacaaatgatgctgatgcaaataacatcgtaggagctgaaggaactttgtactatagatgctcaaaccaatgtgcttatgtcacatg |
200 |
Q |
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| T |
52133673 |
ctggctttcttcccgcaaatgatgcagatgccaataacatcgtaggagatgaagtaactttgtactatagatgcttaaacaggtgtgcttatgtcacatg |
52133574 |
T |
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| Q |
201 |
tgata |
205 |
Q |
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||||| |
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| T |
52133573 |
tgata |
52133569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 8977 - 8865
Alignment:
| Q |
7 |
agtgttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgtctcttctgctggaattgctggct |
106 |
Q |
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|||||||||||| |||| |||||||||||||||||| | ||||||||||| | | ||||||| ||||||||| ||| ||| ||| |||||| ||| |
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| T |
8977 |
agtgttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggcc |
8878 |
T |
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| Q |
107 |
ttcttcccacaaa |
119 |
Q |
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| T |
8877 |
ttcttcccgcaaa |
8865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 17020293 - 17020342
Alignment:
| Q |
7 |
agtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
56 |
Q |
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| T |
17020293 |
agtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17020342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 17550730 - 17550779
Alignment:
| Q |
7 |
agtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
56 |
Q |
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|||||||||||| |||| ||| |||||||||||||| ||||||||||||| |
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| T |
17550730 |
agtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17550779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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