View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11279_high_51 (Length: 227)
Name: NF11279_high_51
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_51 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 22364259 - 22364451
Alignment:
| Q |
15 |
cataggggataaatgatgatggtctttgaataatatagaaatacatgagaaatgtgtttgtaatgatggtattcattccaagccatccaaacaattgaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364259 |
cataggggataaatgatgatggtctttgaataatatagaaatacatgagaaatgtgtttgtaatgatggtattcattccaagccatccaaacaattgaaa |
22364358 |
T |
|
| Q |
115 |
cctacggtttgaagaaagaaaagaaaaggagtatgtcttagagctgagatacaattgcatgatcacttaataaaaatacggaccccatgcaaa |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364359 |
cctacagtttgaagaaagaaaagaaaaggagtatgtcttagagctgagatacaattgcatgatcacttaataaaaatacggaccccatgcaaa |
22364451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University