View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_6 (Length: 499)
Name: NF11279_high_6
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 78 - 496
Target Start/End: Complemental strand, 30905473 - 30905059
Alignment:
| Q |
78 |
tgaggtgaagttttactctaaaactgccaaatgaatgtccttgtttctttttgtttctttactaacacttgtaatattattcaggacattacatacctca |
177 |
Q |
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| T |
30905473 |
tgaggtgaagttttactctaaaactgccaaatgaatgtccttgtttcttt----------actaacacttataatattattcaggacattacatacctca |
30905384 |
T |
|
| Q |
178 |
gttagctaatgctattcttgattataatgctccttcaaccggctacaaattctatttgaaaggagttgctgtaagat------cccattcatatgatatc |
271 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
30905383 |
gttagctaatgctattcttgattataatgctcattcaaccggttacaaattcaatttgaagggagttgctgtaagataaagatccctttcatatgatatc |
30905284 |
T |
|
| Q |
272 |
ttgtatatttggctattgattatttaattaagaaatctgggaatttaattaaagtaatctaagctttttgccttggctttgtcagataggaaacccactt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30905283 |
ttgtatatttggctattgattatttaattaagaaatctgggaatttaattaaagtaatctaagctttttgccttggctttgtcagataggaaacccactt |
30905184 |
T |
|
| Q |
372 |
ctgaatcttgatcgcgatgcacaagcaacatatgattatttctggtcacatggaatgatttcagatgaaattggccttgccattacaaaagactgcgatt |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30905183 |
ctgaatcttgatcgcgatgcacaagcaacatatgattatttctggtcacatggaatgatttcagatgaaattggccttgccattacaaaagattgcgatt |
30905084 |
T |
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| Q |
472 |
ttgatgattatacctttgcttctcc |
496 |
Q |
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| T |
30905083 |
ttgatgattatacctttgcatctcc |
30905059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 40960700 - 40960575
Alignment:
| Q |
137 |
tactaacacttgtaatattattcaggacattacatacctcagttagctaatgctattcttgattataatgctccttcaaccggctacaaattctatttga |
236 |
Q |
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|||||||| || |||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||| | | | ||||||| | | | |
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| T |
40960700 |
tactaacatttataatgttattcaggacattacatacctcaattagccaatgccattcttgattataatgctcattcatcaagtttcaaattcaacataa |
40960601 |
T |
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| Q |
237 |
aaggagttgctgtaagatcccattca |
262 |
Q |
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| T |
40960600 |
aaggagttgccgtaagatccaattca |
40960575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 477
Target Start/End: Complemental strand, 40960427 - 40960300
Alignment:
| Q |
350 |
ttgtcagataggaaacccacttctgaatcttgatcgcgatgcacaagcaacatatgattatttctggtcacatggaatgatttcagatgaaattggcctt |
449 |
Q |
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|||| |||| ||||||||||||||||| | ||||| ||| ||||||||||||||| ||| |||||||||| ||||||||||| |||||||||| ||| |
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| T |
40960427 |
ttgttagattggaaacccacttctgaaattggatcgtgatagacaagcaacatatgaatatctctggtcacacggaatgatttcggatgaaattgttctt |
40960328 |
T |
|
| Q |
450 |
gccattacaaaagactgcgattttgatg |
477 |
Q |
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| T |
40960327 |
gccattaggaatgattgcaattttgatg |
40960300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 477
Target Start/End: Original strand, 40973164 - 40973248
Alignment:
| Q |
393 |
caagcaacatatgattatttctggtcacatggaatgatttcagatgaaattggccttgccattacaaaagactgcgattttgatg |
477 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||| |||||| || || ||| ||||||||| |
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| T |
40973164 |
caagcaacatatgaatattactggtcacatggaatgatttccgatgaaataggccttaccattatgaatgattgcaattttgatg |
40973248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 40972901 - 40973014
Alignment:
| Q |
152 |
tattattcaggacattacatacctcagttagctaatgctattcttgattataatgc---tccttcaaccggctacaaattctatttgaaaggagttgctg |
248 |
Q |
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||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||| || |||||| || | ||||||| || | |||||||| |||| |
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| T |
40972901 |
tattatttagggcatttcatacctcagttagctaacactattcttgattataatgctcatcattcaactggtttcaaattcaatataaaaggagtcgctg |
40973000 |
T |
|
| Q |
249 |
taagatcccattca |
262 |
Q |
| |
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|||||| ||||||| |
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| T |
40973001 |
taagattccattca |
40973014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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