View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_high_9 (Length: 474)
Name: NF11279_high_9
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 54791100 - 54791557
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791100 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
54791199 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54791200 |
ccgaagctgtcaaccaacctgtaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgattctggata |
54791299 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54791300 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
54791399 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791400 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
54791499 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtacct |
458 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791500 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtacct |
54791557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 54778045 - 54777590
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54778045 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
54777946 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |
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| T |
54777945 |
ccgaagctgtcaaccaacctgtaccgcaggttgagaattatgt-tggccatggacaggtataatcgttaacattaagagcaaccttaacgattctggata |
54777847 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
54777846 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
54777747 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |
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| T |
54777746 |
ggtttcaagaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggaatggaattcaatggacatgctggccagttcagacattt |
54777647 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtacc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54777646 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtacc |
54777590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 52283758 - 52284215
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
52283758 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtttttggagactgacctagcaaatgaagcagaccaaatacctcccccgcctttga |
52283857 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| | || ||| ||||||| |
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|
| T |
52283858 |
ccgaagctgtcaaccaacctgcaccacaggttgagaactatgtctggccatggacaggcataattgttaatattaagagcaaactgaatgattctggata |
52283957 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
52283958 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
52284057 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52284058 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
52284157 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtacct |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284158 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtacct |
52284215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 799049 - 799462
Alignment:
| Q |
16 |
caaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgtcaacc |
115 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||||||||| |||||| |||||||||| | | |||||| || |
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| T |
799049 |
caaaaagcaaaccacctggctctggcaaagtttttgaggactgacttagcaaatgaagcagaccaagtacctcgcccggctttgactgtagctgttgtcc |
799148 |
T |
|
| Q |
116 |
aacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggatactggctaaaggaatt |
215 |
Q |
| |
|
|||||| | | |||||||| || || ||||| |||||||||||| | || ||||| | |||| | | ||| ||||||||| || ||||||||| |
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|
| T |
799149 |
aacctgtcc---aagttgagaactacgtttggccgtggacaggcatacttgtcaacataa---gcaaatcacatgattctggatacttgcaaaaggaatt |
799242 |
T |
|
| Q |
216 |
tgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaatggtttcatgaatgca |
315 |
Q |
| |
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||| ||||||| ||| |||| ||| ||| ||||| ||||||||| || |||||| ||||||||||||||||||||||||| || ||||||||| |
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|
| T |
799243 |
tgctaagtacaaaccgttggctgttcatacgttcttgatggatggtaactccgtggctgttatagacttcaacaatgactggaatgggtttatgaatgca |
799342 |
T |
|
| Q |
316 |
agtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacatttatggatgggttgcac |
415 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| || ||| || ||||| |||||||| | |||| |||||| ||||||||| ||||| || |||||||||| |
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|
| T |
799343 |
agtgagcttgagaaatgctttgagactaaacgtcgtggaaaaaaggattggaattccatggacttgcaggacagttcagagatttacggttgggttgcac |
799442 |
T |
|
| Q |
416 |
gtgaagatgattataattgt |
435 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
799443 |
gtgaagatgattataattgt |
799462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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