View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11279_low_10 (Length: 484)

Name: NF11279_low_10
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11279_low_10
NF11279_low_10
[»] chr1 (7 HSPs)
chr1 (17-479)||(29449014-29449453)
chr1 (290-359)||(29457080-29457149)
chr1 (17-82)||(29462215-29462280)
chr1 (39-113)||(29444247-29444321)
chr1 (39-113)||(29454254-29454328)
chr1 (384-431)||(29456984-29457031)
chr1 (237-289)||(29461783-29461834)
[»] chr2 (5 HSPs)
chr2 (17-113)||(9363666-9363762)
chr2 (39-113)||(12019793-12019867)
chr2 (39-113)||(11988326-11988400)
chr2 (39-109)||(12007150-12007220)
chr2 (17-117)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (17-113)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (50-114)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 29449453 - 29449014
Alignment:
Q  17 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449453 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 29449354  T
Q  117 tnnnnnnnncacatgaatatcatataagtaaactcaacaaattagctagtcacgtgcatgggccgaatgtccatgtatcattgctcttatcaataataac 216  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  29449353 taaaaaaaacacatgaatatcatataagtaaactcaacaaattagctagtcac----atgggccgaatgtccatgtatcattgctcttatcaataataac 29449258  T
Q  217 ctgccacgtcatgtacctatttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtctacagcagaaaaggattaagagtccac 316  Q
    |||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29449257 ctgccacgtcatgtacctatttctgttgg-------------------gcacaaagggatggcattcaaagtctacagcataaaaggattaagagtccac 29449177  T
Q  317 cttatgatattacaacataaaacttaatttgtagaaaaaatattcaagacatgattnnnnnnngggcgtttttgtgtgaaaatgccttgtaggtttcttt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  29449176 cttatgatattacaacataaaacttaatttgtagaaaaaatattcaagacatgattaaaaaaagggcgtttttgtgtgaaaatgccttgtaggtttcttt 29449077  T
Q  417 tgcaagtacatatttgtgaagtgtagtttcttgtattagattttgtgtagtacctttgcttct 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449076 tgcaagtacatatttgtgaagtgtagtttcttgtattagattttgtgtagtacctttgcttct 29449014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 29457149 - 29457080
Alignment:
Q  290 tacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat 359  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||  |||||||||||||||    
T  29457149 tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatat 29457080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 29462280 - 29462215
Alignment:
Q  17 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgt 82  Q
    |||||||| ||||||||| | |||| ||| ||||||| |||||||||||||| |||||||||||||    
T  29462280 agaaacaacttgagcatttggtttctgctacacatcattggttcttctttcattcccttacaatgt 29462215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 29444321 - 29444247
Alignment:
Q  39 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 113  Q
    ||||||| | |||||  |||||||| |||||||||||||||| ||  ||||||||||||| ||||||||| ||||    
T  29444321 ttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaagttatcc 29444247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 29454328 - 29454254
Alignment:
Q  39 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 113  Q
    ||||||| |||||||  | |||||| |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  29454328 ttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatcc 29454254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 29457031 - 29456984
Alignment:
Q  384 gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt 431  Q
    |||||||||||||||| | ||||||||||||||||| |||||| ||||    
T  29457031 gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt 29456984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 29461834 - 29461783
Alignment:
Q  237 ttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtc 289  Q
    |||| ||||||||||||||||||||| ||||| |||| |||||| ||||||||    
T  29461834 ttctattggatctataaaacaaccttaggcac-aaggaatggcagtcaaagtc 29461783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 9363666 - 9363762
Alignment:
Q  17 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 113  Q
    |||||||| ||||| || ||  ||||||| ||||||  |||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||    
T  9363666 agaaacaacttgagtatccggcttcagctacacatccctggttcttctatcactcccttacaatgacaatttaaatccttgggacaagaagtcatcc 9363762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 12019867 - 12019793
Alignment:
Q  39 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 113  Q
    ||||||| |||||||  | |||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12019867 ttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctttggacaagaagtcatcc 12019793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 11988400 - 11988326
Alignment:
Q  39 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 113  Q
    ||||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  11988400 ttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatcc 11988326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 12007220 - 12007150
Alignment:
Q  39 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtc 109  Q
    ||||||| ||||| |  |||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtc 12007150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 9287782 - 9287882
Alignment:
Q  17 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 116  Q
    |||||||| |||||||| |  |||||||| |||||||  ||| ||||  ||  ||||||||||| || ||||||||||| || |||| ||||| ||||||    
T  9287782 agaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttg 9287881  T
Q  117 t 117  Q
    |    
T  9287882 t 9287882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 41968397 - 41968300
Alignment:
Q  17 agaaacaatttgagcattc-gttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 113  Q
    |||||||| |||||||| | | |||||||| |||||||  ||| |||| |||  ||||||||||| || |||||||||||||| ||||||||||||||    
T  41968397 agaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 45242651 - 45242715
Alignment:
Q  50 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcct 114  Q
    |||| ||||||||| ||  ||| ||| ||||||| |||||||||| ||| |||||||||||||||    
T  45242651 atcactggttcttccttggctctctttcaatgtcaatttaaatccctggaacaagaagtcatcct 45242715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University