View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_13 (Length: 445)
Name: NF11279_low_13
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 42263094 - 42262674
Alignment:
| Q |
1 |
tacccatgttgaagcataagtcacaacggtattcttctttctgtcaacagcatcaatgctcttctgggatgataagaaaatgacatgcaagccaaatcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42263094 |
tacccatgttgaagcataagtcacaacggtattcttctttctatcaacagcatcaatgctcttctgggatgataagaaaatgacatgcaagccaaatcag |
42262995 |
T |
|
| Q |
101 |
ctaatatttttatcatgttcaaactttctcttgtcttatccattaagtttgaagaagaataaacgttgataatgtggagttcggtcgaaagtaaaagtta |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
42262994 |
ctaatatttt-atcatgttcaaactttctcttgtcttatccattaagtttgaagaagaataaacgttgataatgtggagttcggttgaaagtaaacgtta |
42262896 |
T |
|
| Q |
201 |
agttcaatcgttcaatgattgttttaaacaagattcgaactcggnnnnnnnaaataaattgtcctttactacagtcggtcattgtatttctcatatttg- |
299 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42262895 |
agtccaatcgttcaatgattgttttaaacaagattcgaactcggttttttcaaataaattgtcctttactacagtcggtcattgtatttctcatatttga |
42262796 |
T |
|
| Q |
300 |
----atattacaataaaaattgaaagtggaattcattttgagatgtannnnnnnagcaaatgtgtaccatattaggatggagaaagtattatgtttggag |
395 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42262795 |
tattatattacaaaaaaaattgaaagtggaattcattttgagatgtatttttttaacaaatgtgtaccatattaggatgcagaaagtattatgtttggag |
42262696 |
T |
|
| Q |
396 |
aagctatggatttgcttcatgc |
417 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
42262695 |
aagctatggatttgcttcatgc |
42262674 |
T |
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