View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11279_low_17 (Length: 421)

Name: NF11279_low_17
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11279_low_17
NF11279_low_17
[»] chr1 (24 HSPs)
chr1 (20-416)||(12440781-12441184)
chr1 (281-375)||(25347698-25347792)
chr1 (278-374)||(28451266-28451362)
chr1 (276-371)||(22061923-22062019)
chr1 (104-172)||(28928781-28928849)
chr1 (104-172)||(46333948-46334016)
chr1 (101-172)||(1819488-1819559)
chr1 (35-70)||(16302788-16302823)
chr1 (101-164)||(32157601-32157664)
chr1 (99-162)||(48823882-48823945)
chr1 (35-70)||(50678216-50678251)
chr1 (99-153)||(29371365-29371419)
chr1 (104-172)||(741504-741572)
chr1 (185-229)||(36774823-36774867)
chr1 (101-172)||(4609064-4609135)
chr1 (185-216)||(10449474-10449505)
chr1 (35-70)||(15581579-15581614)
chr1 (99-149)||(4579263-4579312)
chr1 (107-172)||(37155114-37155180)
chr1 (104-153)||(4579171-4579219)
chr1 (185-214)||(49200059-49200088)
chr1 (108-172)||(38674511-38674575)
chr1 (106-138)||(46325685-46325717)
chr1 (104-172)||(48604949-48605017)
[»] chr7 (14 HSPs)
chr7 (276-374)||(7137931-7138029)
chr7 (279-374)||(43306239-43306335)
chr7 (104-172)||(41018230-41018298)
chr7 (276-323)||(40352213-40352260)
chr7 (107-171)||(34854700-34854764)
chr7 (296-372)||(40023134-40023212)
chr7 (35-68)||(23417299-23417332)
chr7 (185-228)||(46206690-46206733)
chr7 (126-172)||(4290613-4290659)
chr7 (110-172)||(29053322-29053384)
chr7 (191-225)||(43303803-43303837)
chr7 (115-172)||(4649390-4649447)
chr7 (107-172)||(10419526-10419591)
chr7 (104-172)||(27028795-27028863)
[»] chr4 (30 HSPs)
chr4 (276-370)||(34723745-34723839)
chr4 (279-374)||(44720654-44720749)
chr4 (276-376)||(19615105-19615205)
chr4 (104-172)||(40789247-40789315)
chr4 (104-172)||(50384107-50384175)
chr4 (185-228)||(9712953-9712996)
chr4 (104-172)||(47404587-47404655)
chr4 (116-172)||(52028617-52028673)
chr4 (104-172)||(52298606-52298673)
chr4 (102-153)||(40789179-40789230)
chr4 (99-153)||(9712843-9712897)
chr4 (35-71)||(4342108-4342144)
chr4 (185-225)||(11392399-11392439)
chr4 (188-228)||(17285814-17285854)
chr4 (104-172)||(24006072-24006140)
chr4 (104-172)||(31430463-31430531)
chr4 (189-228)||(6607500-6607539)
chr4 (185-216)||(30023646-30023677)
chr4 (35-70)||(35292058-35292093)
chr4 (101-172)||(55089995-55090066)
chr4 (126-172)||(6271770-6271816)
chr4 (101-151)||(24006151-24006201)
chr4 (32-70)||(31227708-31227746)
chr4 (35-68)||(21263666-21263699)
chr4 (183-216)||(31012153-31012186)
chr4 (126-163)||(35682190-35682227)
chr4 (185-213)||(22435452-22435480)
chr4 (183-215)||(44023036-44023068)
chr4 (188-216)||(46321439-46321467)
chr4 (188-216)||(54223579-54223607)
[»] chr8 (13 HSPs)
chr8 (276-374)||(11660964-11661062)
chr8 (296-369)||(24948398-24948471)
chr8 (104-163)||(6296607-6296666)
chr8 (109-172)||(37618735-37618797)
chr8 (104-163)||(39139838-39139897)
chr8 (104-172)||(1880306-1880373)
chr8 (185-216)||(7931550-7931581)
chr8 (126-172)||(5667165-5667211)
chr8 (110-172)||(13470047-13470109)
chr8 (36-70)||(28873795-28873829)
chr8 (186-215)||(31470771-31470800)
chr8 (104-172)||(34229709-34229777)
chr8 (104-172)||(34541805-34541873)
[»] chr6 (10 HSPs)
chr6 (279-374)||(12853068-12853163)
chr6 (279-371)||(9754684-9754776)
chr6 (101-172)||(10521848-10521919)
chr6 (96-163)||(31654299-31654366)
chr6 (185-225)||(5981629-5981669)
chr6 (185-216)||(369520-369551)
chr6 (100-163)||(24618678-24618741)
chr6 (126-172)||(12343168-12343214)
chr6 (189-230)||(178646-178687)
chr6 (185-226)||(5981546-5981587)
[»] chr5 (11 HSPs)
chr5 (279-374)||(9164198-9164293)
chr5 (286-372)||(30672483-30672569)
chr5 (278-356)||(19351506-19351584)
chr5 (183-216)||(7137667-7137700)
chr5 (104-164)||(28818919-28818979)
chr5 (19-71)||(31933559-31933611)
chr5 (104-172)||(37325560-37325628)
chr5 (35-70)||(4943540-4943575)
chr5 (185-216)||(42772066-42772097)
chr5 (126-172)||(2953258-2953304)
chr5 (126-172)||(29699435-29699481)
[»] chr3 (18 HSPs)
chr3 (188-228)||(28695333-28695373)
chr3 (104-172)||(33689244-33689312)
chr3 (35-70)||(27011194-27011229)
chr3 (101-213)||(45755090-45755201)
chr3 (183-216)||(22893998-22894031)
chr3 (20-64)||(24374285-24374329)
chr3 (104-172)||(49418693-49418761)
chr3 (101-172)||(29031713-29031784)
chr3 (101-172)||(30476473-30476544)
chr3 (35-70)||(42029366-42029401)
chr3 (101-172)||(47677254-47677325)
chr3 (101-163)||(1272492-1272554)
chr3 (233-267)||(5134957-5134991)
chr3 (186-216)||(29081625-29081655)
chr3 (100-153)||(18321738-18321791)
chr3 (126-163)||(30734479-30734516)
chr3 (104-153)||(49414510-49414559)
chr3 (104-172)||(43139711-43139779)
[»] chr2 (7 HSPs)
chr2 (108-163)||(565316-565370)
chr2 (108-172)||(15011348-15011412)
chr2 (98-169)||(14464551-14464622)
chr2 (35-70)||(28219031-28219066)
chr2 (35-69)||(44246349-44246383)
chr2 (107-164)||(2893968-2894025)
chr2 (115-163)||(2828597-2828645)
[»] scaffold0110 (1 HSPs)
scaffold0110 (35-69)||(38650-38684)
[»] scaffold0022 (2 HSPs)
scaffold0022 (35-70)||(44200-44235)
scaffold0022 (35-70)||(77921-77956)
[»] scaffold0343 (1 HSPs)
scaffold0343 (185-215)||(12308-12338)
[»] scaffold1033 (1 HSPs)
scaffold1033 (103-172)||(2281-2350)
[»] scaffold1029 (1 HSPs)
scaffold1029 (103-172)||(2281-2350)
[»] scaffold0047 (1 HSPs)
scaffold0047 (119-172)||(63825-63878)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 12441184 - 12440781
Alignment:
Q  20 gatagaacgtagtttcattgtttggttttgtaaaaaaggaatggaatggaacgagatactatccattccatactatatcatggatagcacttggatgaca 119  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||    
T  12441184 gatagaacgtagttttattgtttggttttctaaaaaaggaatggaatggaacgggatgctatccattccatcctatatcatggataacacttggatgaca 12441085  T
Q  120 tagaatttggtgaca---------ttggcaaatcacaatgtcataatccttgtaaaagagaggg--nnnnnnnggtcacttgtgacattgtggttggtca 208  Q
    |||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  12441084 tagaatttggtgacattggtggcattggctaatcacaatgtcataatccttgtaaaagagagggaaaaaaaaaagtcacttgtgacattgtggttggtca 12440985  T
Q  209 ----------------atgtcacctaagtgctacccctatttaaaccgcgttaaattggatcggattggttcggannnnnnnnagcaccaaccgaaccga 292  Q
                    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||            ||||||||||           
T  12440984 atgtcaccaattctctatgtcacctaagtgctacccctatttaaaccgcgttaaattggatcggatttttt----------ttagcaccaacc------- 12440902  T
Q  293 gctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacacccctagccttataccttgctatc 392  Q
       ||||||||||| |||||||||||| |||| || ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| || |||||    
T  12440901 ---gaaccgcacattttttattttttgtatcggttcactttttgcctcataaccgagccgaaccacaccacgaacaccccaagccttatacttttctatc 12440805  T
Q  393 tgaccatcttgcttcaacttagtc 416  Q
    ||||||||| |||| |||||||||    
T  12440804 tgaccatctagctttaacttagtc 12440781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 375
Target Start/End: Original strand, 25347698 - 25347792
Alignment:
Q  281 caaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacacccctag 375  Q
    ||||||||||||||  |||||||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||    
T  25347698 caaccgaaccgagccaaaccgcacatgttttactttttggatcggttcactttttgcctcataaccgagccgaaccacaccgcgaacacccctag 25347792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 374
Target Start/End: Complemental strand, 28451362 - 28451266
Alignment:
Q  278 caccaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccccta 374  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||| ||| |||||| ||| |||||||||||||    
T  28451362 caccaaccgaaccgagccgaaccgcacatattttattttttggatcggttcactttttgcttcataaccgagtcgaaccgcactgcgaacaccccta 28451266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 276 - 371
Target Start/End: Original strand, 22061923 - 22062019
Alignment:
Q  276 agcaccaaccgaaccgagctgaaccgcacatatttt-attttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccc 371  Q
    ||||||||||||||||||| |||||||| || |||| ||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||    
T  22061923 agcaccaaccgaaccgagccgaaccgcatatttttttattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcgaacaccc 22062019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 28928781 - 28928849
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||||| ||||||||||||||| ||||||||||||| | | ||||| ||||||||    
T  28928781 tagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgcttgtgaaagagag 28928849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 46333948 - 46334016
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||||| || | |||||||||| ||||||||||||| ||| ||||| ||||||||    
T  46333948 tagcacttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgcttgtgaaagagag 46334016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 1819488 - 1819559
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||||| |||||||||| || ||||||||||   ||||||||||||| ||| ||||| ||||||||    
T  1819488 ggatagcacttgaatgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagag 1819559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 16302823 - 16302788
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  16302823 cattgtttggttttgtaaaaaaggaatggaatggaa 16302788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 32157664 - 32157601
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgta 164  Q
    |||||| |||||||||||||||| ||||||||||||||  ||||||| ||||| ||| ||||||    
T  32157664 ggatagtacttggatgacatagagtttggtgacattggtcaatcacagtgtcacaatgcttgta 32157601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 48823882 - 48823945
Alignment:
Q  99 atggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttg 162  Q
    |||| |||||||||| ||||||||| || |||||||||||| ||||||||||||| ||| ||||    
T  48823882 atgggtagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttg 48823945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 50678251 - 50678216
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  50678251 cattgtttggttttgtaaaaaaggaatggaatggaa 50678216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 29371365 - 29371419
Alignment:
Q  99 atggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtca 153  Q
    |||||||||| |||| ||||||||| || |||||||||||| |||||||||||||    
T  29371365 atggatagcatttgggtgacatagagttaggtgacattggccaatcacaatgtca 29371419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 741504 - 741572
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||  ||| |||||||| |||||||||| | ||||||||||||| ||| ||||| ||||||||    
T  741504 tagcacttgcgtgatatagaattaggtgacattgcccaatcacaatgtcacaatgcttgtgaaagagag 741572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 36774867 - 36774823
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacctaagtgctacccc 229  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||    
T  36774867 cacttgtgacattgtgattgatcaatgtcacccaagtgctacccc 36774823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 4609135 - 4609064
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||| |||||  ||||||||| || |||||||||||  ||||||||||||| ||| ||||| ||||||||    
T  4609135 ggatagtacttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagag 4609064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 10449505 - 10449474
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacc 216  Q
    ||||||||||||||||||||||||||||||||    
T  10449505 cacttgtgacattgtggttggtcaatgtcacc 10449474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 15581579 - 15581614
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15581579 cattgtttggttttgtaaaaaagaaatggaatggaa 15581614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 4579312 - 4579263
Alignment:
Q  99 atggatagcacttggatgacatagaatttggtgacattggcaaatcacaat 149  Q
    |||| |||||||||| |||||||||||| |||||||||||| |||||||||    
T  4579312 atgggtagcacttgggtgacatagaatt-ggtgacattggccaatcacaat 4579263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 37155180 - 37155114
Alignment:
Q  107 cacttggatgaca-tagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||||| ||||| |||| || |||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  37155180 cacttgggtgacaatagagttgggtgacattggccaatcacaatgtcacaatacttgtgaaagagag 37155114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 4579171 - 4579219
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtca 153  Q
    |||||||||| |||||||||||| |||||||||||| || ||||||||||    
T  4579171 tagcacttgggtgacatagaatt-ggtgacattggccaaccacaatgtca 4579219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 214
Target Start/End: Original strand, 49200059 - 49200088
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtca 214  Q
    ||||||||||||||||||||||||||||||    
T  49200059 cacttgtgacattgtggttggtcaatgtca 49200088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 38674511 - 38674575
Alignment:
Q  108 acttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||| |||||| || || ||||| |||||| ||||||||||||| ||| ||||| ||||||||    
T  38674511 acttgggtgacatggagttgggtgatattggccaatcacaatgtcacaatgcttgtgaaagagag 38674575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 46325717 - 46325685
Alignment:
Q  106 gcacttggatgacatagaatttggtgacattgg 138  Q
    |||||||||||||||||| ||||||||||||||    
T  46325717 gcacttggatgacatagagtttggtgacattgg 46325685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 48604949 - 48605017
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||| |||||||| ||||| || |||||||||||  ||||||||||||| |||  |||| ||||||||    
T  48604949 tagcatttggatgatatagagttaggtgacattggtcaatcacaatgtcacaatatttgtgaaagagag 48605017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 7137931 - 7138029
Alignment:
Q  276 agcaccaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccccta 374  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||||||||||||    
T  7137931 agcaccaaccgaaccgagccgaaccgcacatattttattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcgaacaccccta 7138029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 43306239 - 43306335
Alignment:
Q  279 accaaccgaaccgagctgaaccgcacatattttatttt-ttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccccta 374  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| || ||||||||| ||||||| ||| |||||| |||||||||||||||||    
T  43306239 accaaccgaaccgaaccgaaccgcacatattttatttttttggatcggttcactttttgcttcataaccgagacgaaccgcaccgcgaacaccccta 43306335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 41018230 - 41018298
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||  ||| ||||| ||||||||    
T  41018230 tagcacttggatgacatagagttgggtgacattggccaatcacaatgtcccaatgcttgtgaaagagag 41018298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 40352260 - 40352213
Alignment:
Q  276 agcaccaaccgaaccgagctgaaccgcacatattttattttttggatc 323  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  40352260 agcaccaaccaaaccgagccgaaccgcacatattttattttttggatc 40352213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 34854700 - 34854764
Alignment:
Q  107 cacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagaga 171  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||| || ||| ||||| |||||||    
T  34854700 cacttgggtgacatagagtttggtgacattggccaatcacaatgccacaatgcttgtgaaagaga 34854764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 40023134 - 40023212
Alignment:
Q  296 gaaccgcacatattttatttt--ttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacacccc 372  Q
    |||||| ||||||||||||||  |||||||| || | ||||||||||||||  |||||||||| ||||||||| |||||    
T  40023134 gaaccgtacatattttattttttttggatcggttcaatttttgcctcataatcgagccgaaccgcaccgcgaagacccc 40023212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 23417332 - 23417299
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatgg 68  Q
    ||||||||||||||||||||||||||||||||||    
T  23417332 cattgtttggttttgtaaaaaaggaatggaatgg 23417299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 46206690 - 46206733
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacctaagtgctaccc 228  Q
    |||| |||||||||||||||| |||||||||| |||||||||||    
T  46206690 cactcgtgacattgtggttggccaatgtcacccaagtgctaccc 46206733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 4290659 - 4290613
Alignment:
Q  126 ttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  4290659 ttggtgacattggccaatcacaatgtcacaattcttgtgaaagagag 4290613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 29053322 - 29053384
Alignment:
Q  110 ttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||| ||||||||| ||||||||||||||| |||||||||| |  ||| ||||| ||||||||    
T  29053322 ttgggtgacatagagtttggtgacattggccaatcacaatgcctcaatgcttgtgaaagagag 29053384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 43303837 - 43303803
Alignment:
Q  191 tgacattgtggttggtcaatgtcacctaagtgcta 225  Q
    |||||||||||||||||||||||||| ||||||||    
T  43303837 tgacattgtggttggtcaatgtcacccaagtgcta 43303803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 4649447 - 4649390
Alignment:
Q  115 tgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||||||| ||||||||||||||  |||||||||||||  || ||||| ||||||||    
T  4649447 tgacatagagtttggtgacattggtcaatcacaatgtcacgatgcttgtgaaagagag 4649390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 10419591 - 10419526
Alignment:
Q  107 cacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||||| | ||||||| |||||||||||||||  |||||||||||| ||  ||||| ||||||||    
T  10419591 cacttgggtaacatagagtttggtgacattggctgatcacaatgtcacaaaacttgtgaaagagag 10419526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 27028795 - 27028863
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||||| || ||| |||||||  ||||||||||||| ||| ||| | ||||||||    
T  27028795 tagcacttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgcttctgaaagagag 27028863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 34723745 - 34723839
Alignment:
Q  276 agcaccaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacacc 370  Q
    ||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  34723745 agcaccaaccgaaccgagctgaatcgcatatgttttattttttggatcgattcactttttgcctcataaccgagccgaaccgcaccgcgaacacc 34723839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 44720749 - 44720654
Alignment:
Q  279 accaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccccta 374  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||| || ||||||| |||||||||||||||||    
T  44720749 accaatcgaaccgagccgaaccgcacatattttattttttggatcggttcactttttgcttcataaccgaaccgaaccgcaccgcgaacaccccta 44720654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 19615105 - 19615205
Alignment:
Q  276 agcaccaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacacccctag 375  Q
    |||| |||||||||||||| |||| ||| || ||| ||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||||||    
T  19615105 agcaacaaccgaaccgagccgaactgcatatgtttgattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcgaacacccctag 19615204  T
Q  376 c 376  Q
    |    
T  19615205 c 19615205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 40789315 - 40789247
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||||| |||||||| |||||| ||||||||||||| ||| ||||| ||||||||    
T  40789315 tagcacttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgcttgtgaaagagag 40789247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 50384107 - 50384175
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||||| || |||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  50384107 tagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 50384175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 9712953 - 9712996
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacctaagtgctaccc 228  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  9712953 cacttgtgacattgtggttggtcaatgtcacccaagtgctaccc 9712996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 47404587 - 47404655
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||||| || |||||||||||  ||||||||||||| ||| ||||| ||||||||    
T  47404587 tagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagag 47404655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 52028673 - 52028617
Alignment:
Q  116 gacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  52028673 gacatagaattgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 52028617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 52298673 - 52298606
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||| |||||||||| |||||||||  ||||||||||||| ||||||||||||| ||||    
T  52298673 tagcacttgggtgatatagaatttg-tgacattggtcaatcacaatgtcagaatccttgtaaaaaagag 52298606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 40789179 - 40789230
Alignment:
Q  102 gatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtca 153  Q
    |||| |||||| |||||||||| ||||||||||||||| |||||||||||||    
T  40789179 gataacacttgaatgacatagagtttggtgacattggccaatcacaatgtca 40789230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 9712843 - 9712897
Alignment:
Q  99 atggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtca 153  Q
    |||| |||||||||| |||||||| |||||||||||||||| ||||| |||||||    
T  9712843 atgggtagcacttgggtgacatagcatttggtgacattggccaatcagaatgtca 9712897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 4342144 - 4342108
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaac 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4342144 cattgtttggttttgtaaaaaagtaatggaatggaac 4342108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 11392399 - 11392439
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacctaagtgcta 225  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  11392399 cacttgtgacattgtggttggccaatgtcacccaagtgcta 11392439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 17285814 - 17285854
Alignment:
Q  188 ttgtgacattgtggttggtcaatgtcacctaagtgctaccc 228  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  17285814 ttgtgacattgtgattggtcaatgtcacccaagtgctaccc 17285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 24006072 - 24006140
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||| | || |||||||||||| |||||||||| || ||| ||||| ||||||||    
T  24006072 tagcacttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgcttgtgaaagagag 24006140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 31430463 - 31430531
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||||| || |||||||||| | ||||||||||||| ||| ||| | ||||||||    
T  31430463 tagcacttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgcttatgaaagagag 31430531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 6607500 - 6607539
Alignment:
Q  189 tgtgacattgtggttggtcaatgtcacctaagtgctaccc 228  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  6607500 tgtgacattatggttggtcaatgtcacccaagtgctaccc 6607539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 30023646 - 30023677
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacc 216  Q
    ||||||||||||||||||||||||||||||||    
T  30023646 cacttgtgacattgtggttggtcaatgtcacc 30023677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 35292058 - 35292093
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35292058 cattgtttggttttgcaaaaaaggaatggaatggaa 35292093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 55089995 - 55090066
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||| ||||||| ||||||||| ||  ||||||||||  ||||||||||||| ||| ||||| ||||||||    
T  55089995 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgaaagagag 55090066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 6271816 - 6271770
Alignment:
Q  126 ttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  6271816 ttggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 6271770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 24006201 - 24006151
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgt 151  Q
    ||||||||||||| ||||||||| || |||||||||| | |||||||||||    
T  24006201 ggatagcacttgggtgacatagagttgggtgacattgaccaatcacaatgt 24006151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 31227708 - 31227746
Alignment:
Q  32 tttcattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  31227708 tttcaatgtttggttttgtaaaaaatgaatggaatggaa 31227746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 21263699 - 21263666
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatgg 68  Q
    |||||||||||||||||||||||| |||||||||    
T  21263699 cattgtttggttttgtaaaaaagggatggaatgg 21263666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 31012186 - 31012153
Alignment:
Q  183 gtcacttgtgacattgtggttggtcaatgtcacc 216  Q
    ||||| ||||||||||||||||||||||||||||    
T  31012186 gtcacatgtgacattgtggttggtcaatgtcacc 31012153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 35682190 - 35682227
Alignment:
Q  126 ttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  35682190 ttggtgacattggccaatcacaatgtcataatacttgt 35682227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 22435452 - 22435480
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtc 213  Q
    |||||||||||||||||||||||||||||    
T  22435452 cacttgtgacattgtggttggtcaatgtc 22435480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 44023036 - 44023068
Alignment:
Q  183 gtcacttgtgacattgtggttggtcaatgtcac 215  Q
    ||||||||| |||||||||||||||||||||||    
T  44023036 gtcacttgtaacattgtggttggtcaatgtcac 44023068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 46321439 - 46321467
Alignment:
Q  188 ttgtgacattgtggttggtcaatgtcacc 216  Q
    |||||||||||||||||||||||||||||    
T  46321439 ttgtgacattgtggttggtcaatgtcacc 46321467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 54223607 - 54223579
Alignment:
Q  188 ttgtgacattgtggttggtcaatgtcacc 216  Q
    |||||||||||||||||||||||||||||    
T  54223607 ttgtgacattgtggttggtcaatgtcacc 54223579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 374
Target Start/End: Complemental strand, 11661062 - 11660964
Alignment:
Q  276 agcaccaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccccta 374  Q
    ||||||||||||||||||| |||||||| || ||| ||||||||||||| || ||||||||||||||||| |||||||||| |||||||||||||||||    
T  11661062 agcaccaaccgaaccgagccgaaccgcatatgtttgattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcgaacaccccta 11660964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 24948398 - 24948471
Alignment:
Q  296 gaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacac 369  Q
    ||||| ||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  24948398 gaaccacacatgttttactttttggatcggttcactttttgcctcataaccgagccgaaccacaccgcgaacac 24948471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 6296607 - 6296666
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    |||||||||||||||||||| || |||||||||| | ||||||||||||||||| |||||    
T  6296607 tagcacttggatgacatagagttgggtgacattgaccaatcacaatgtcataatgcttgt 6296666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 37618735 - 37618797
Alignment:
Q  109 cttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||    
T  37618735 cttgggtgacatagaatt-ggtgacattggccaatcacaatgtcacaatccttgtaagagagag 37618797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 39139897 - 39139838
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    ||||| |||| |||||||| |||||||||||||||  ||||||||||||| |||||||||    
T  39139897 tagcatttgggtgacatagtatttggtgacattggtcaatcacaatgtcacaatccttgt 39139838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 1880373 - 1880306
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| |||||||||||| |||||||||||  ||||||||||||| | ||||| | ||||||||    
T  1880373 tagcacttgggtgacatagaatt-ggtgacattggtcaatcacaatgtcacagtccttatgaaagagag 1880306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 7931581 - 7931550
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacc 216  Q
    ||||||||||||||||||||||||||||||||    
T  7931581 cacttgtgacattgtggttggtcaatgtcacc 7931550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 5667211 - 5667165
Alignment:
Q  126 ttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||||||| ||| ||||||||||||| ||||| ||||||||    
T  5667211 ttggtgacattggccaattacaatgtcataatgcttgtgaaagagag 5667165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 13470109 - 13470047
Alignment:
Q  110 ttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||| |||||||| |||||||||||||||  ||||||||||| | ||| ||| ||||||||||    
T  13470109 ttgggtgacatagcatttggtgacattggtcaatcacaatgttacaatacttataaaagagag 13470047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 28873829 - 28873795
Alignment:
Q  36 attgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  28873829 attgtttggttttgtaaaaaaggaatgaaatggaa 28873795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 31470800 - 31470771
Alignment:
Q  186 acttgtgacattgtggttggtcaatgtcac 215  Q
    ||||||||||||||||||||||||||||||    
T  31470800 acttgtgacattgtggttggtcaatgtcac 31470771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 34229777 - 34229709
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||  ||||||||| || |||||||||||  ||||||||| ||| ||| ||||| ||||||||    
T  34229777 tagcacttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtgaaagagag 34229709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 34541805 - 34541873
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||| | || |||||||||||| ||||| ||| ||| ||| ||||| ||||||||    
T  34541805 tagcacttgggtgacataaagttgggtgacattggccaatcataatatcacaatgcttgtgaaagagag 34541873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 12853163 - 12853068
Alignment:
Q  279 accaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccccta 374  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||| |||||| |||||||||||||||||    
T  12853163 accaaccgaaccgagccgaaccgcacatgttttactttttggatcggttcactttttgcctcataaccgagtcgaaccgcaccgcgaacaccccta 12853068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 9754684 - 9754776
Alignment:
Q  279 accaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccc 371  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||| |||  |||||||||||||||| |||  |||||| |||||| |||||||    
T  9754684 accaaccgaaccgaactgaaccgcatgtatattattttttggattgatccactttttgcctcataattgaatcgaaccgcaccgcaaacaccc 9754776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 10521848 - 10521919
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||| ||| | ||||||||    
T  10521848 ggatagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgcttatgaaagagag 10521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 31654299 - 31654366
Alignment:
Q  96 atcatggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    ||||||| |||||||||| ||| ||||| || |||||||||||| ||||||||||||| ||| |||||    
T  31654299 atcatgggtagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgt 31654366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 5981629 - 5981669
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacctaagtgcta 225  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  5981629 cacttgtgatattgtggttggtcaatgtcacccaagtgcta 5981669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 369520 - 369551
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacc 216  Q
    ||||||||||||||||||||||||||||||||    
T  369520 cacttgtgacattgtggttggtcaatgtcacc 369551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 24618741 - 24618678
Alignment:
Q  100 tggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    |||||||||||||| ||||||||| || |||||| ||| | ||||||||||||| ||| |||||    
T  24618741 tggatagcacttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgcttgt 24618678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 12343214 - 12343168
Alignment:
Q  126 ttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  12343214 ttggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 12343168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 178687 - 178646
Alignment:
Q  189 tgtgacattgtggttggtcaatgtcacctaagtgctacccct 230  Q
    |||||||||||||||| ||||||||||| ||||| |||||||    
T  178687 tgtgacattgtggttgatcaatgtcacccaagtgttacccct 178646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 5981587 - 5981546
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacctaagtgctac 226  Q
    ||||||||| |||||||||||||||||||||  |||||||||    
T  5981587 cacttgtgatattgtggttggtcaatgtcacgcaagtgctac 5981546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 9164198 - 9164293
Alignment:
Q  279 accaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacaccccta 374  Q
    |||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||| ||||||| |||||||||  |||||| ||||||||||    
T  9164198 accaaccgaaccgagccgaactgcacatattttattttttggatcggttcactttttgcttcataaccgagccgaactgcaccgcaaacaccccta 9164293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 30672483 - 30672569
Alignment:
Q  286 gaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaaccacaccgcgaacacccc 372  Q
    ||||||||| |||||||| || ||||||||||||||||| || ||||||||||||||||| |||||||||| |||||| ||||||||    
T  30672483 gaaccgagccgaaccgcatatgttttattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcaaacacccc 30672569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 19351506 - 19351584
Alignment:
Q  278 caccaaccgaaccgagctgaaccgcacatattttattttttggatcgatttactttttgcctcataactgagccgaacc 356  Q
    |||||||||||| |||| ||||||||||| |||||  |||||||||| || ||||||||||||||||| ||||||||||    
T  19351506 caccaaccgaactgagccgaaccgcacatgttttacattttggatcggttcactttttgcctcataaccgagccgaacc 19351584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 7137700 - 7137667
Alignment:
Q  183 gtcacttgtgacattgtggttggtcaatgtcacc 216  Q
    ||||||||||||||||||||||||||||||||||    
T  7137700 gtcacttgtgacattgtggttggtcaatgtcacc 7137667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 28818919 - 28818979
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgta 164  Q
    |||||||||| ||||||||| || |||||||||||  ||||||||||||| ||| ||||||    
T  28818919 tagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatacttgta 28818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 31933611 - 31933559
Alignment:
Q  19 agatagaacgtagtttcattgtttggttttgtaaaaaaggaatggaatggaac 71  Q
    ||||| ||||| |||  ||||||||||||||||||||||||||| ||||||||    
T  31933611 agataaaacgtggttctattgtttggttttgtaaaaaaggaatgtaatggaac 31933559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 37325560 - 37325628
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||| | |||||| | |||||||| ||||| | ||||||||||||| ||||||||| ||||||||    
T  37325560 tagcacttcggtgacattgcatttggtggcattgacgaatcacaatgtcacaatccttgtgaaagagag 37325628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 4943540 - 4943575
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    |||||||||||||||||||||||| |||||||||||    
T  4943540 cattgtttggttttgtaaaaaagggatggaatggaa 4943575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 42772066 - 42772097
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcacc 216  Q
    ||||||||||||||||||||||||||||||||    
T  42772066 cacttgtgacattgtggttggtcaatgtcacc 42772097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 2953304 - 2953258
Alignment:
Q  126 ttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  2953304 ttggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 2953258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 29699481 - 29699435
Alignment:
Q  126 ttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  29699481 ttggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 29699435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 28695373 - 28695333
Alignment:
Q  188 ttgtgacattgtggttggtcaatgtcacctaagtgctaccc 228  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  28695373 ttgtgacattgtggttggtcaatgccacctaagtgctaccc 28695333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 33689312 - 33689244
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| |||||| || || |||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  33689312 tagcacttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 33689244  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 27011194 - 27011229
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  27011194 cattgtttggttttgtaaaaaaggaatggaatggaa 27011229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 45755201 - 45755090
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagagggnnnnnnnggtcacttgtgacattgtg 200  Q
    ||||||||||||| ||| |||||| ||||| |||||||| |||| ||| |||| ||||||||| |||||||| |        |||||| |||||||||||    
T  45755201 ggatagcacttgggtgatatagaa-ttggtaacattggccaatcgcaacgtcacaatccttgtgaaagagagagagaaaaaagtcactggtgacattgtg 45755103  T
Q  201 gttggtcaatgtc 213  Q
    |||| ||||||||    
T  45755102 gttgatcaatgtc 45755090  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 22893998 - 22894031
Alignment:
Q  183 gtcacttgtgacattgtggttggtcaatgtcacc 216  Q
    ||||||||||||||||||||||||||||||||||    
T  22893998 gtcacttgtgacattgtggttggtcaatgtcacc 22894031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 24374329 - 24374285
Alignment:
Q  20 gatagaacgtagtttcattgtttggttttgtaaaaaaggaatgga 64  Q
    |||||| | ||||| ||||||||||||||||||||||||||||||    
T  24374329 gatagatcatagttccattgtttggttttgtaaaaaaggaatgga 24374285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 49418693 - 49418761
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||| ||||||||| || ||||| |||||  |||||||||||||||||  |||| ||||||||    
T  49418693 tagcacttgggtgacatagagttgggtgatattggtcaatcacaatgtcataatatttgtgaaagagag 49418761  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 29031713 - 29031784
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||| |||||| |||||||||| || ||||| |||||  ||||||||||||| ||| ||||| ||||||||    
T  29031713 ggataacacttgcatgacatagagttaggtgatattggtcaatcacaatgtcacaatgcttgtgaaagagag 29031784  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 30476473 - 30476544
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||||||||||  ||||| |||  | |||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  30476473 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 30476544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 42029401 - 42029366
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    |||||||||||||||||||||||| |||||||||||    
T  42029401 cattgtttggttttgtaaaaaagggatggaatggaa 42029366  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 47677254 - 47677325
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||| ||||||  ||||||||| ||||||||||||| |  |||||||||||| ||| ||||| ||||||||    
T  47677254 ggataacacttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgcttgtgaaagagag 47677325  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 1272492 - 1272554
Alignment:
Q  101 ggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    ||||||||||| | ||||||||| ||||||||||||||| ||||| | ||||| ||| |||||    
T  1272492 ggatagcacttaggtgacatagagtttggtgacattggccaatcaaattgtcacaatgcttgt 1272554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 5134957 - 5134991
Alignment:
Q  233 ttaaaccgcgttaaattggatcggattggttcgga 267  Q
    ||||| |||||||||||||||||||||||||||||    
T  5134957 ttaaatcgcgttaaattggatcggattggttcgga 5134991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 29081655 - 29081625
Alignment:
Q  186 acttgtgacattgtggttggtcaatgtcacc 216  Q
    |||||||||||||||||||||||||||||||    
T  29081655 acttgtgacattgtggttggtcaatgtcacc 29081625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 18321791 - 18321738
Alignment:
Q  100 tggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtca 153  Q
    |||||| ||||||||||||||||| || | |||||||||  |||||||||||||    
T  18321791 tggataacacttggatgacatagagttggatgacattggtcaatcacaatgtca 18321738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 30734516 - 30734479
Alignment:
Q  126 ttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  30734516 ttggtgacattggccaatcacaatgtcataatacttgt 30734479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 49414559 - 49414510
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtca 153  Q
    |||||||||| ||||||||| || |||||||||||| ||| |||||||||    
T  49414559 tagcacttgggtgacatagagttgggtgacattggccaattacaatgtca 49414510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 43139711 - 43139779
Alignment:
Q  104 tagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||||||  ||||||||| || |||||||| ||  ||||||||||||| ||| ||||| ||||||||    
T  43139711 tagcacttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgcttgtgaaagagag 43139779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 565316 - 565370
Alignment:
Q  108 acttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    |||||| ||||||| |||| |||||||||||| |||||||||||||||||||||||    
T  565316 acttgggtgacatataatt-ggtgacattggccaatcacaatgtcataatccttgt 565370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 15011412 - 15011348
Alignment:
Q  108 acttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    |||||| ||||||||| ||  ||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  15011412 acttgggtgacatagagttgagtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 15011348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 14464551 - 14464622
Alignment:
Q  98 catggatagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaaga 169  Q
    |||||||||||||||  ||||||||| ||  ||||||||||  ||||||||||||| ||| ||||| |||||    
T  14464551 catggatagcacttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttgtgaaaga 14464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 28219031 - 28219066
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    |||||||||||||||||||||||| |||||||||||    
T  28219031 cattgtttggttttgtaaaaaagggatggaatggaa 28219066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 44246349 - 44246383
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatgga 69  Q
    ||||||||||||||||| |||||||||||||||||    
T  44246349 cattgtttggttttgtataaaaggaatggaatgga 44246383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 2893968 - 2894025
Alignment:
Q  107 cacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgta 164  Q
    ||||||| ||||||||| || |||||||||||| ||||||||| ||| ||| ||||||    
T  2893968 cacttgggtgacatagagttgggtgacattggccaatcacaatctcacaatgcttgta 2894025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 2828597 - 2828645
Alignment:
Q  115 tgacatagaatttggtgacattggcaaatcacaatgtcataatccttgt 163  Q
    ||||||||| || |||||||||||| ||||||||||||| ||| |||||    
T  2828597 tgacatagagttgggtgacattggccaatcacaatgtcaaaatgcttgt 2828645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 38684 - 38650
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatgga 69  Q
    |||||||||||||||||||||||||||||||||||    
T  38684 cattgtttggttttgtaaaaaaggaatggaatgga 38650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 44235 - 44200
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    |||||||||||||||||||||| |||||||||||||    
T  44235 cattgtttggttttgtaaaaaatgaatggaatggaa 44200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 77956 - 77921
Alignment:
Q  35 cattgtttggttttgtaaaaaaggaatggaatggaa 70  Q
    |||||||||||||||||||||| |||||||||||||    
T  77956 cattgtttggttttgtaaaaaatgaatggaatggaa 77921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 215
Target Start/End: Original strand, 12308 - 12338
Alignment:
Q  185 cacttgtgacattgtggttggtcaatgtcac 215  Q
    |||||||||||||||||||||||||||||||    
T  12308 cacttgtgacattgtggttggtcaatgtcac 12338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 2350 - 2281
Alignment:
Q  103 atagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||||||||  |||||||||||| || |||||||   ||||||||||||| ||| ||||| ||||||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagag 2281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 2350 - 2281
Alignment:
Q  103 atagcacttggatgacatagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||||||||  |||||||||||| || |||||||   ||||||||||||| ||| ||||| ||||||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagag 2281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 63878 - 63825
Alignment:
Q  119 atagaatttggtgacattggcaaatcacaatgtcataatccttgtaaaagagag 172  Q
    ||||| || |||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  63878 atagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagag 63825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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