View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_18 (Length: 418)
Name: NF11279_low_18
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 120 - 403
Target Start/End: Complemental strand, 15050388 - 15050105
Alignment:
| Q |
120 |
gtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgt |
219 |
Q |
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| T |
15050388 |
gtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgt |
15050289 |
T |
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| Q |
220 |
aaagaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcataaccttttcatggaaaagggg |
319 |
Q |
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| T |
15050288 |
aaagaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgagaacttaccttgacatgatttctatatcttcatacccttttcatggaaaagggg |
15050189 |
T |
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| Q |
320 |
cctcctgaagcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttg |
403 |
Q |
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| T |
15050188 |
cctcctgaggcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttg |
15050105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 118 - 403
Target Start/End: Complemental strand, 17882927 - 17882642
Alignment:
| Q |
118 |
tggtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggat |
217 |
Q |
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| T |
17882927 |
tggtaggttaactttagtataagatttgtgaaacttctaacaatactatctacaggctgtatgtttcaatgctcctatgcaaccatgggaaattgcaaat |
17882828 |
T |
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| Q |
218 |
gtaaagaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcataaccttttcatggaaaagg |
317 |
Q |
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| T |
17882827 |
gtaaagaaggttgtgcaaaaagaattgtctgaaggtgtgaatgaacgaggaattactttgacagggtttctatttcttcatgtccttttcatagaaaaag |
17882728 |
T |
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| Q |
318 |
ggcctcctgaagcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttg |
403 |
Q |
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| T |
17882727 |
ggcctcttgagacaacatggactgtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttg |
17882642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 141 - 403
Target Start/End: Complemental strand, 15017598 - 15017336
Alignment:
| Q |
141 |
atttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaagaaggttgtgcaaacaaa |
240 |
Q |
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||||||| ||||||||||||||||||| |||||||| ||||||||| || || || | | | |||||||| |||||||||| |||||||| ||| || |
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| T |
15017598 |
atttgtgcaaaatctaactaaactatctacaggttagatgtttcaatgctcctctgaagccacatgaaattttggatgtaaaggaggttgtgaaaaagaa |
15017499 |
T |
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| Q |
241 |
tttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcataaccttttcatggaaaaggggcctcctgaagcaacatggacc |
340 |
Q |
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| T |
15017498 |
tttgtcagaaggcgtgaatgaacgaggacttacttcaacaggatttctatttcttcatgcccttttcatagaaaaagggcctcttgaggcaacatggact |
15017399 |
T |
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| Q |
341 |
gtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttg |
403 |
Q |
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| T |
15017398 |
gtgctaaaaaagtttggatataattatgatgtcaagcttgctgctgatttatttccgcctttg |
15017336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 403
Target Start/End: Complemental strand, 14775534 - 14775269
Alignment:
| Q |
138 |
aagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaagaaggttgtgcaaac |
237 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||| || || |||| ||| || ||||||| || ||||||||||||||||| || |
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| T |
14775534 |
aagatttgtgaaaaatctaactaaactctctacaggttaaatgttttaatgctccttttcaaccatccgaaattttggttgtaaagaaggttgtgcgaaa |
14775435 |
T |
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| Q |
238 |
aaatttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcataaccttttcatggaaaaggggcctcctgaagcaacatgg |
337 |
Q |
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| T |
14775434 |
aaaattgcctgaaggtgtgaatgagcggggactttctttggcaggatttatatctcttcacgccctcttcttagaaaaaatgccccgtgagaaaacatgg |
14775335 |
T |
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| Q |
338 |
accgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttg |
403 |
Q |
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| T |
14775334 |
accgtgctcaggaagtttggatataatgatgatatcaagcttgctgataatttgattccacctttg |
14775269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 123 - 403
Target Start/End: Original strand, 36874192 - 36874472
Alignment:
| Q |
123 |
ggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaa |
222 |
Q |
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||||||| || || |||||||||||||||||||||| ||||||| |||||||| |||||||||| || || || ||| | |||||| || |||||| |
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| T |
36874192 |
ggttaacatgtgtataagatttgtgaaaaatctaaccaaactatatacaggttagatgtttcaacgctcctctgcaaccagcagaaattgtgggtgtaaa |
36874291 |
T |
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| Q |
223 |
gaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgaggacttaccttgacaggatttctatatcttcataaccttttcatggaaaaggggcct |
322 |
Q |
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||||||||||||| || |||||||||||||| || |||||||||||||| ||||| |||||||||| ||||||| ||||||||| ||||| |||| | |
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| T |
36874292 |
gaaggttgtgcaagataaattgtctgaaggtgttaacgaacgaggacttactttgacgggatttctatttcttcatgcccttttcatagaaaaagggcgt |
36874391 |
T |
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| Q |
323 |
cctgaagcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttg |
403 |
Q |
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| ||| | |||||||| || ||||| ||||| ||||||||| |||| ||||||||| |||||||| | ||||||||||| |
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| T |
36874392 |
cttgagactacatggactgtgctcagaaagttcggatataatgatgaaatcaagcttgctgatgatgcagttccacctttg |
36874472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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