View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_20 (Length: 403)
Name: NF11279_low_20
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 5681073 - 5680698
Alignment:
| Q |
17 |
gttgggaagtggttgacacaacacaacgtactaagcgggcatggatggattaaaaacgaagtatagcagcaatgttgatatggggtagccttttattaat |
116 |
Q |
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| T |
5681073 |
gttgggaagtggttgacacaacacaacgtactaagcgggcatggatggattaaaaacgaagta--gcagcaatgttgatatggggtagccttttattaat |
5680976 |
T |
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| Q |
117 |
ggattttgactaatttatatgtaagaacaatttatacgtaccgcataatttggattttgaaatatccaatttagacaatgtaacgatcagacaggaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5680975 |
ggattttgactaatttatatgtaagaacaatttatacgtaccgcataatttggattttgaaatatccaatttagacaatgtaactatcagacaggaaaat |
5680876 |
T |
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| Q |
217 |
cctacttatatgaatcgatgtaagccatatctatgattagtttgcactaaggtgattcagattttgaaatatccaatctgagtattaaatgatcagacag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5680875 |
cctacttatatgaatcgatgtaagccatatctatgattagtctgcactaaggtgattcagattttgaaatatccaatcagagtattaaatgatcagacag |
5680776 |
T |
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| Q |
317 |
aaaaatccatgattagtcattcaataagggacccttatcatgcatgatgtgaaaacacgaacctaaaccatgtctctg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680775 |
aaaaatccatgattagtcattcaataagggacccttatcatgcatgatgtgaaaacacgaacctaaaccatgtctctg |
5680698 |
T |
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