View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_22 (Length: 384)
Name: NF11279_low_22
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 2112248 - 2111909
Alignment:
| Q |
19 |
caaccgtggtcaataatttgtctaaaacaaaacttgcaaatgatgatgttggacttaagtgtgcaacgtattgtaaaagtttggtattcattatattaaa |
118 |
Q |
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| T |
2112248 |
caaccgtcgtcaataatttgtctaaaacaaaacttacaaatgatgatgttggacttaagtgtgcaacgtattgtaaaagtttggtattcattatattaaa |
2112149 |
T |
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| Q |
119 |
cctagttgtacaaaagtgtcaagcggccaaatggggtattttgggaattttggagggggcgtgggtagttggtagggtggaaaaagaaattataattttc |
218 |
Q |
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| T |
2112148 |
cctagttgtacaaaagtgtgcaacg-----------tattttgggaattttggagggggcgtggttagttggtagggtggaaaaagaaattataattttc |
2112060 |
T |
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| Q |
219 |
ttttcccaccttcgggcttctcgcatatcctctgaaatttctattttgtccttgttcgggttatataattagnnnnnnnnnncttcatattttataatct |
318 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
2112059 |
ttttcccaccttcgggcttctcacataccctctgaaatttctattttgtccttgttcgggttatataattagttttttttttcttcatattttataattt |
2111960 |
T |
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| Q |
319 |
gaatcctatcaaaacttagaaagtgtaatttaattcatatgaaggtctgtg |
369 |
Q |
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| T |
2111959 |
gaatcctgtcaaaacttagaaagcgtaatttaattcatatgaaggtctgtg |
2111909 |
T |
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