View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_25 (Length: 330)
Name: NF11279_low_25
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 18104283 - 18103984
Alignment:
| Q |
21 |
acactgtgggagagaatcgtgcatatatggtagattattgtttagtcaatttgattggaacaattctcagaggttgagatttttccaaagtaatcccata |
120 |
Q |
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| T |
18104283 |
acactgtgggagagaatcgtgcatatatggtagattattgtttagtcaatttgattggaacaattctcagaggttgagatttttccaaagtaatcccata |
18104184 |
T |
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| Q |
121 |
ttcatcttctttattcaaatcatcaatatttaatccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaata |
220 |
Q |
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| T |
18104183 |
ttcatcttctttattcaaatcatcaatattcaatccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaata |
18104084 |
T |
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| Q |
221 |
gccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcactatccaaaaacctctctg |
320 |
Q |
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| T |
18104083 |
gccaaaggcaaaccaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaacttcactatccaaaaacctctctg |
18103984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 34 - 320
Target Start/End: Complemental strand, 18094262 - 18093976
Alignment:
| Q |
34 |
gaatcgtgcatatatggtagattattgtttagtcaatttgattggaacaattctcagaggttgagatttttccaaagtaatcccatattcatcttcttta |
133 |
Q |
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| T |
18094262 |
gaatcatgcatacatggtggattattgtttagtcaatttgattggaacaattctcacaggttgagatttttccaaagtaatcccatattcatcttctttg |
18094163 |
T |
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| Q |
134 |
ttcaaatcatcaatatttaatccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaatagccaaaggcaaac |
233 |
Q |
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| T |
18094162 |
ttcaaatcatcaatatttaatccatcttcaagtttccaatcaaagcaattaatcaaagatcccaacatcataggcaacattctaatagccaaaggcaagc |
18094063 |
T |
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| Q |
234 |
caggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcactatccaaaaacctctctg |
320 |
Q |
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| T |
18094062 |
caggacaaattcttctaccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatttcattgtccaaaaacctttctg |
18093976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 31131740 - 31131645
Alignment:
| Q |
154 |
tccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaatagccaaaggcaaaccaggacaaattcttct |
249 |
Q |
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| T |
31131740 |
tccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcatgccaggacatattcttct |
31131645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 31135184 - 31135279
Alignment:
| Q |
154 |
tccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaatagccaaaggcaaaccaggacaaattcttct |
249 |
Q |
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| T |
31135184 |
tccattttccagtttccaatcaaaggaattaatcaatgatcctaacattgtatgcaacattctaatagcaagtggcattccaggacatattcttct |
31135279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 31153855 - 31153760
Alignment:
| Q |
154 |
tccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaatagccaaaggcaaaccaggacaaattcttct |
249 |
Q |
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| T |
31153855 |
tccattttccagtttccaatcaaaggaattaatcaatgatcctaacattgtatgcaacattctaatagcaagtggcattccaggacatattcttct |
31153760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 23244719 - 23244653
Alignment:
| Q |
232 |
accaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatt |
298 |
Q |
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| T |
23244719 |
accaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaatt |
23244653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 23346848 - 23346803
Alignment:
| Q |
233 |
ccaggacaaattcttcttccagacccaaatggaataagctcaaaat |
278 |
Q |
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| T |
23346848 |
ccaggacaaattcttctaccagcaccaaatggaataagttcaaaat |
23346803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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