View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_28 (Length: 309)
Name: NF11279_low_28
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_28 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 23553860 - 23553564
Alignment:
| Q |
11 |
cacagaacctaaaacttaacgaacaaaacctacataaaactcacagttcagagaaaaggacatgaacaacttcgagcttgtggcgcttggagttacaaat |
110 |
Q |
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| T |
23553860 |
cacagaacctaaaacttaatgaacaaaacctacataaaactcacagttcagagaa--ggacatgaacaacttcgagcttgtggcgcttggagttacaaat |
23553763 |
T |
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| Q |
111 |
tggcatatgaaaccacaaattagtatgcgtcgtgtgtgtttacaactccgattaaagtcaagatcagcgtgcagcgtgtgcgatggttaagatttcagag |
210 |
Q |
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| T |
23553762 |
tggcatatgaaaccacaaattagaatgcgtcgtgtgtgtttacaacaccgatttaagtcaagatcagcgtgcagcgtgtgcgatggttaagatttcagag |
23553663 |
T |
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| Q |
211 |
tttgtcgtggttgaaatctccgtgtgccgtggttaaaatccatgtgtgtgacagttcacaccgttgtttgagctaagcgttcaaatcggtcgatggcca |
309 |
Q |
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| T |
23553662 |
tttgtcgtggttgaaatctccgtgtgcggtggttaaaatccatgtgtgtgacagttcacaccgttgtttgagctaagcgttcaaatcggccgatggcca |
23553564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 23306435 - 23306392
Alignment:
| Q |
13 |
cagaacctaaaacttaacgaacaaaacctacataaaactcacag |
56 |
Q |
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| T |
23306435 |
cagaacctaaaacttaaccaacaaagcctacatcaaactcacag |
23306392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 23306321 - 23306235
Alignment:
| Q |
173 |
atcagcgtgcagcgtgtgcgatggttaagatttcagag--tttgtcgtggttgaaatctccgtgtgccgtggttaaaatccatgtgtg |
258 |
Q |
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| T |
23306321 |
atcagtgtgcagcgtgttcgatggctaagatttcagagtatgtgtggtggttgaaattgacgtgtg-ggtggttaaaattcatgtgtg |
23306235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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