View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_3 (Length: 683)
Name: NF11279_low_3
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 15 - 666
Target Start/End: Complemental strand, 27262116 - 27261465
Alignment:
| Q |
15 |
cagagatgtactctccaagagatggaactgtcaccagaagagtacgccatgctgggcggttaacttcggtgttctctagcccaatggaagccaaactttt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27262116 |
cagagatgtactctccaagagatggaactgtcaccagaagagtacgccatgctgggcggttaacttcggtgttctctagcccaattgaagccaaactttt |
27262017 |
T |
|
| Q |
115 |
cccacaagtagcattggactcatccatggccaaaataccacgtcctggtgaagcaattgttttctgcatccacacacaagcaacaaaaaataagactcaa |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27262016 |
cccacaagtagcattggactcatccatggccaaaataccacgtcctggtgaagcaattgttttctgcatccacacacaagcaacaaaaaataagactcaa |
27261917 |
T |
|
| Q |
215 |
tagattattacaatgaaacatacaatattttatcaacaatgtaaaatcggaatatcgttacttagggcatctacaaattctcaacaaaaatcccatacat |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261916 |
tagattattacaatgaaacatacaatattttatcaacaatgtaaaatcggaatatcgttacttagggcatctacaaattctcaacaaaaatcccatacat |
27261817 |
T |
|
| Q |
315 |
tctagaaaaaatataatgatgcatacaacactgcataaacaatgcgaaagtggaatatcatcatcacttagaagttacaacttgtccaacattgaataga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261816 |
tctagaaaaaatataatgatgcatacaacactgcataaacaatgcgaaagtggaatatcatcatcacttagaagttacaacttgtccaacattgaataga |
27261717 |
T |
|
| Q |
415 |
atcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaagaatttcaacaattttttattccaactatgtaacatgtatctcac |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261716 |
atcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaagaatttcaacaattttttattccaactatgtaacatgtatctcac |
27261617 |
T |
|
| Q |
515 |
cttatctcactttcaacttgttttccttctcctactttcttaagtctactttttcactttaagtcactaaagttgttgaatgtgacaaccacatgaaatt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27261616 |
cttatctcactttcaacttgttttccttctcctactttcttaagtctactttttcattttaagtcactaaagttgttgaatgtgataaccacatgaaatt |
27261517 |
T |
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| Q |
615 |
caaccatctctagtggtaaagtcaaataagaacctgttcctaacttctagag |
666 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27261516 |
caaccatctctagtggtaaagccaaataagaacctgttcctaacttctagag |
27261465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 27250287 - 27250043
Alignment:
| Q |
15 |
cagagatgtactctccaagagatggaactgtcaccagaagagtacgccatgctgggcggttaacttcggtgttctctagcccaatggaagccaaactttt |
114 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||| ||||| ||||||||||| |||||||||| || |
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| T |
27250287 |
cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt |
27250188 |
T |
|
| Q |
115 |
cccacaagtagcattggactcatccatggccaaaataccacgtcctggtgaagcaattgttttctgcatccacacacaagcaacaaaaaataagactcaa |
214 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
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| T |
27250187 |
tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaattgttttctgcatccacacacaagcaaca-aaaacaagacacaa |
27250089 |
T |
|
| Q |
215 |
tagattattacaatgaaacatacaatattttatcaacaatgtaaaa |
260 |
Q |
| |
|
| |||| ||||||||||||| |||||| | |||| |||||||| |
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|
| T |
27250088 |
gaaattagaacaatgaaacataaaatattgaaacaacgatgtaaaa |
27250043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 21194514 - 21194287
Alignment:
| Q |
15 |
cagagatgtactctccaagagatggaactgtcaccagaagagtacgccatgctgggcggttaacttcggtgttctctagcccaatggaagccaaactttt |
114 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||| ||||| ||||||||||| |||||||||| || |
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| T |
21194514 |
cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt |
21194415 |
T |
|
| Q |
115 |
cccacaagtagcattggactcatccatggccaaaataccacgtcctggtgaagcaattgttttctgcatccacacacaagcaacaaaaaataagactcaa |
214 |
Q |
| |
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||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
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| T |
21194414 |
tccacatgtagcattggattcatccatggctaaaattccacgccctggtgaagcaattgttttctgcatccacacacaagcaaca-aaaacaagacacaa |
21194316 |
T |
|
| Q |
215 |
tagattattacaatgaaacatacaatatt |
243 |
Q |
| |
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| |||| ||||||||||||| |||||| |
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|
| T |
21194315 |
gaaattagaacaatgaaacataaaatatt |
21194287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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