View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_33 (Length: 281)
Name: NF11279_low_33
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 4029946 - 4029690
Alignment:
| Q |
11 |
cacagaaatgggatgtatactcattaggtgttgttttgcttgaattgttaaccggtaaatctactgaatcttctcccacatcggcgtcatcatcggcttc |
110 |
Q |
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| T |
4029946 |
cacagaaatgggatgtatactcattaggtgttgttttgcttgaattgttaaccggtaaatctactgaatcttctcccacatcggcgtcatcatcggcttc |
4029847 |
T |
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| Q |
111 |
tgttgaagtttcagatttggtaaggtgggtgagaaatgggttcgatcaagaaagtccattatctgaaatggttgatccatctttgctacaagaagttcgt |
210 |
Q |
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| T |
4029846 |
tgttgaagtttcagatttggtaaggtgggtgagaaatgggttcgatcaagaaagtccattatctgaaatggttgatccatctttgctacaagaagttcgt |
4029747 |
T |
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| Q |
211 |
gctaagaaagaggtattggctgtgtttcatgtagcactttcatgtactgaaggtgat |
267 |
Q |
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| T |
4029746 |
gctaagaaagaggtattggctgtgtttcatgtagcactttcatgtactgaaggtgat |
4029690 |
T |
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Back To:
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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 25885428 - 25885581
Alignment:
| Q |
101 |
catcggcttctgttgaagtttcagatttggtaaggtgggtgagaaatgggttcgatcaagaaagtccattatctgaaatggttgatccatctttgctaca |
200 |
Q |
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| T |
25885428 |
catcgacttctgtcgaagtgcctgacttggtaaggtgggtaaagaaagggtttgaacaagaaagccctttatctgaaatggttgatccatcacttcttca |
25885527 |
T |
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| Q |
201 |
agaagttcgtgctaagaaagaggtattggctgtgtttcatgtagcactttcatg |
254 |
Q |
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| T |
25885528 |
agaaattcatgccaagaaagaagtactagctgtgtttcatgtagcactatcatg |
25885581 |
T |
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