View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_36 (Length: 265)
Name: NF11279_low_36
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 23553526 - 23553280
Alignment:
| Q |
1 |
catcgtcggcaaaggttgattgtaagcgaatgacattatctatgtagcagaagctatataaccacacttatagaataacaaagaggtataataacattac |
100 |
Q |
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| T |
23553526 |
catcgtcggcaaaggttgattgtaagcgaatgacattatctatgtagcagaagctatataaccacacttatagaataacaaagaggtaaaataacattac |
23553427 |
T |
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| Q |
101 |
gttttttctaactacgcaatattcattgtaggataatcaagagaaattgttaaaactatcaacaaaataccaaatatatcattaaaatctatgcacaaat |
200 |
Q |
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| T |
23553426 |
gttttttctaactacgcaatattcattgtagg-taatcaaaagaaatttttaaaactatgaacaaaataccaaatatatca-taaaatctatgtacaaat |
23553329 |
T |
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| Q |
201 |
aatgtagccattataagatgataataaacaagggtttttagggttcaaa |
249 |
Q |
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| T |
23553328 |
aatgtagccattataagatgataataaacaagggtttttagggttcaaa |
23553280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 249
Target Start/End: Complemental strand, 23305810 - 23305664
Alignment:
| Q |
109 |
taactacgcaatattcattgtaggataatcaagagaaattgttaaaactatcaacaaaatac-------caaatatatcattaaaatctatgcacaaata |
201 |
Q |
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| T |
23305810 |
taactacgcaaaattcattgtaggtgaatcaagataaattgttataactatcaacaaaataccaaccagcaaacatat-attaaaatctatgcactaata |
23305712 |
T |
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| Q |
202 |
atgtagccattataagatgataataaacaagggtttttagggttcaaa |
249 |
Q |
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| T |
23305711 |
atgtagtcattataagatcatgataaacaaggggtttgagagttcaaa |
23305664 |
T |
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