View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_4 (Length: 606)
Name: NF11279_low_4
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 6533965 - 6534562
Alignment:
| Q |
1 |
tattttgtttcaaaatcattattacatactctctcagaaaccttcaatatttgagaagggtatagcggaagtaaaagaattaggatttgaccccaaaaca |
100 |
Q |
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| T |
6533965 |
tattttgtttcaaaatcattattacatactctctcagaatccttcaatatttgagaagggtatagcggaagttaaagaattaggatttgaccccaaaaca |
6534064 |
T |
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| Q |
101 |
acccttttcgttgtcgcattgcgggctaagattaatagcaaatcccattgggaaaggaagatttatttgtataagaaatggggttggtctgatgaaatta |
200 |
Q |
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| T |
6534065 |
acccttttcatcgtcgcattgcgggctaagattaatagcaaatcccattgggaaaggaagatttatttgtataagaaatggggttggtctgatgaaatta |
6534164 |
T |
|
| Q |
201 |
tcgcctcagcatttttgaagtatccatggtgtatgttggcatctgaggaaaaaattgaggcggtgatgcagtttcttgttaatcacatgggttgggagtc |
300 |
Q |
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| T |
6534165 |
tcgcctcagcatttttgaagtatccatggtgtatgttggcatctgaggaaaaaattgaggcggtgatgcagtttcttgttaatcacatgggttgggaatc |
6534264 |
T |
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| Q |
301 |
taatgtacttgccaaacatccgatgcttcttatgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttg |
400 |
Q |
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| T |
6534265 |
taatgtacttgccaaacatccgatgcttcttatgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttg |
6534364 |
T |
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| Q |
401 |
attaaggatgctaagttggctgcacctttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgacgaagaagcatctcagctgttga |
500 |
Q |
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| T |
6534365 |
attaaggatgctaagttggctgcacctttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgaggaagaagcatctcagctgttga |
6534464 |
T |
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| Q |
501 |
agttgtatgaagagaaaagagatgcttcaactttcaaataaggttttgaaaaaagattcacagccacgatcttggaagcaacacaaagggtctctgct |
598 |
Q |
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| T |
6534465 |
agttgtatgaagagaaaagagatgcttcaactttcaaataaggttttgaaaaaagattcgcagccacgatcttggaagcaacacaaagggtctctgct |
6534562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 67 - 524
Target Start/End: Original strand, 6542780 - 6543237
Alignment:
| Q |
67 |
ggaagtaaaagaattaggatttgaccccaaaacaacccttttcgttgtcgcattgcgggctaagattaatagcaaatcccattgggaaaggaagatttat |
166 |
Q |
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| T |
6542780 |
ggaagtaaaggaattaggatttaaacccgaaacaacgtttttcattgttgcattgcgtgctaagattaatagaaaattcctttgggaaaggaagattgat |
6542879 |
T |
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| Q |
167 |
ttgtataagaaatggggttggtctgatgaaattatcgcctcagcatttttgaagtatccatggtgtatgttggcatctgaggaaaaaattgaggcggtga |
266 |
Q |
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| T |
6542880 |
gtctataagaaatggggttggtctgaagaaagttttgtctcggcatttttgaagtatccatggtgtatgttggcatctgttaataaaattgaggcaacaa |
6542979 |
T |
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| Q |
267 |
tgcagtttcttgttaatcacatgggttgggagtctaatgtacttgccaaacatccgatgcttcttatgatgagtttagagaaaagggttattcctagggc |
366 |
Q |
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| T |
6542980 |
tgaatttttttgttgatcacatgggttggaaccctattgtgcttgcaaaacacccaatacttcttttgttgagtcttgagaaaagggttattcctagagc |
6543079 |
T |
|
| Q |
367 |
ttttgttttgaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacctttcaaagtctctgaggatctgtttttgaagagatatgtg |
466 |
Q |
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| T |
6543080 |
ttttgtcttgaaatttcttgaatccaaaggtttgattaaggatgctaaattggctgcagctttcaaagtttctgaggatgtgtttttgaagagatttgtg |
6543179 |
T |
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| Q |
467 |
aattgctttgacgaagaagcatctcagctgttgaagttgtatgaagagaaaagagatg |
524 |
Q |
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| T |
6543180 |
acttgctacgaggaagaagcttctcaactgttgaagttgtatgaagagaaaaaagatg |
6543237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 327 - 524
Target Start/End: Original strand, 6540648 - 6540845
Alignment:
| Q |
327 |
ttcttatgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacc |
426 |
Q |
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| T |
6540648 |
ttcttttgctgagtcttgagaaaagggttattcttagggcatctttcttgaaatttcttgtgtccaaaggtttgattaaggatgctaaattggcttcatc |
6540747 |
T |
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| Q |
427 |
tttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgacgaagaagcatctcagctgttgaagttgtatgaagagaaaagagatg |
524 |
Q |
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| T |
6540748 |
tttccaactttatgagtgtttgtttttcaagaagttcgtgaattgctttgaggaagaagcttctcagctgttgaagttgtatgaagagaaaatagatg |
6540845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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