View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11279_low_45 (Length: 242)
Name: NF11279_low_45
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6533984 - 6533760
Alignment:
| Q |
1 |
aatgattttgaaacaaaataagaagtttagactcagggaccccatattgaagcagtagctgaatattgtgagatgggtatttagaataaaggaaacaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6533984 |
aatgattttgaaacaaaataagaagtttagactcagggaccccatattgaagcagtagctgaatattgtgagatgggtatttagaataaaggaaacaaga |
6533885 |
T |
|
| Q |
101 |
gcaatgtttgagagatgcaatggtagattgatcagaaagtaagaatcttttgataaaatcataacaaggggttaatgtattttgcaagctttgagacaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6533884 |
gcaatgtttgagagatgcaatggtagattgatcagaaagtaagaatcttttgataaaatcataacaaggggttattgtattttgcaagctttgagacaac |
6533785 |
T |
|
| Q |
201 |
ataagaggatttctggtgatgatgt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6533784 |
ataagaggatttctggtgatgatgt |
6533760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 6542729 - 6542509
Alignment:
| Q |
5 |
attttgaaacaaaataagaagtttagactcagggaccccatattgaagcagtagctgaatattgtgagatgggtatttagaataaaggaaacaagagcaa |
104 |
Q |
| |
|
|||| |||| |||||| || |||||||||||| ||||||| ||||||||| | |||||||||||||||||| |||||||||||| || |||| |||| |
|
|
| T |
6542729 |
atttcgaaaaaaaatacaaactttagactcaggtaccccattttgaagcaggaattgaatattgtgagatgggattttagaataaagcaagcaagcgcaa |
6542630 |
T |
|
| Q |
105 |
tgtttgagagatgcaatggtagattgatcagaaagtaagaatcttttgataaaatcataacaaggggttaatgtattttgcaagctttgagacaacataa |
204 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| || |||| |||| |
|
|
| T |
6542629 |
tgtttgagagaagcgatgatagattgatcagaaagtaagaatcttttgataaaatgataacaaggggttattgtattttccaagcttcgacacaatataa |
6542530 |
T |
|
| Q |
205 |
gaggatttctggtgatgatgt |
225 |
Q |
| |
|
||||||| ||| |||||||| |
|
|
| T |
6542529 |
aaggatttttggagatgatgt |
6542509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University