View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_47 (Length: 241)
Name: NF11279_low_47
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43119529 - 43119308
Alignment:
| Q |
1 |
tgacggaaaaatacataaatgaaccaaaatgagttattaaaagaaccgtatgtgtacacatcattcttcttcacnnnnnnnnnnnnnnngtgtacacatc |
100 |
Q |
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| T |
43119529 |
tgacgaaaaaatacataaatgaaccaaaatgagttattaaaagaatcgtatgtgtacacatcattcttcttc----ttcaaaaaaagaagtgtacacatc |
43119434 |
T |
|
| Q |
101 |
attaatttagtttgtcattggctaggttttgactcggctcatccagttttgttatcaaatcattttattcagtttgacaatttatctggtacatcaaaag |
200 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
43119433 |
attaatttagtttgtcattggctaagttttgacttggctcatccggttttgttatcaaatcattttattcagtttgacaatttagctagtacatcaaaag |
43119334 |
T |
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| Q |
201 |
cgaagacatcaattatgtttcttatt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43119333 |
cgaagacatcaattatgtttcttatt |
43119308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 18417692 - 18417803
Alignment:
| Q |
115 |
tcattggctaggttttgactcggctcatccagttttgttatcaaatcattttattcagtttgacaatttatctggtacatcaaaagcgaagacatcaatt |
214 |
Q |
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||||||| | |||||||||| ||| ||||| |||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
18417692 |
tcattggttgggttttgacttggcccatccggttttgttattagatcattttattcagtttggcaatttagttggtacatcaaaagcgaagacttcaatt |
18417791 |
T |
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| Q |
215 |
atgtttcttatt |
226 |
Q |
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|||||||||||| |
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| T |
18417792 |
atgtttcttatt |
18417803 |
T |
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