View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_48 (Length: 240)
Name: NF11279_low_48
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31730453 - 31730231
Alignment:
| Q |
1 |
ttccttcatcaacttttgaatttttaactttgtttcctcatacaccttcttattccaccaatcttcttaattgtaacgaatgaaaagcggtcattgatct |
100 |
Q |
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| T |
31730453 |
ttccttcatcaatttttgaatttttaactttgtttcctcatacaccttcttattccaccaatcttcttaattgtaacgaatgaaaagtggtcaatgatct |
31730354 |
T |
|
| Q |
101 |
gactcatctttcaatagaacccatattgtaaaattttatcaagtatcaagccactattctgaaaccaacactctatctagtctactcattgtgacaccat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31730353 |
gactcatctttcaatagaatccatattgtaaaattttatcaagtatcaagccactattctgaaaccaacactctatctagtctactcattgtgacaccat |
31730254 |
T |
|
| Q |
201 |
ttcgatgtgcttagatagaatgc |
223 |
Q |
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||||||||||||||| ||||||| |
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| T |
31730253 |
ttcgatgtgcttagacagaatgc |
31730231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 31734361 - 31734295
Alignment:
| Q |
60 |
aatcttcttaattgtaacgaatgaaaagcggtcattgatctgactcatctttcaatagaacccatat |
126 |
Q |
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|||||||| |||||||||| |||||||||||||| ||||||||| ||||| | ||||||||| |||| |
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| T |
31734361 |
aatcttctgaattgtaacggatgaaaagcggtcaatgatctgacacatctcttaatagaacctatat |
31734295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 6495700 - 6495486
Alignment:
| Q |
1 |
ttccttcatcaacttttgaatttttaactttgtttcctcatacaccttcttattccaccaatcttcttaattgtaacgaatgaaaagcggtcattgatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
6495700 |
ttccttcatcaacttttgaatttttaactttgtttcctcatacaccttcttattccaccaatcttcttaattgtaaccaatgaaaagcggtcaatgatct |
6495601 |
T |
|
| Q |
101 |
gactcatctttcaatagaacccatattgtaaaattttatcaagtatcaagccactattctgaaaccaacactctatctagtctactcattgtgacaccat |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
6495600 |
gactcatctttgaatagaacccatattgtaaaattttatcaagtatcaagccactattctgaaaccaacactctatctagtttactcactgtgacaccat |
6495501 |
T |
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| Q |
201 |
ttcgatgtgcttaga |
215 |
Q |
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||||||||||||||| |
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| T |
6495500 |
ttcgatgtgcttaga |
6495486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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