View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_5 (Length: 554)
Name: NF11279_low_5
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 311 - 533
Target Start/End: Original strand, 38005128 - 38005350
Alignment:
| Q |
311 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacattaacatttttagaaagcctcaacaagctcctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38005128 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacatcaacatttttagaaagcctcaacaagctcctc |
38005227 |
T |
|
| Q |
411 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005228 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
38005327 |
T |
|
| Q |
511 |
ttggacccaacaaacaatgtccc |
533 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
38005328 |
ttggacccaacaaacaatgtccc |
38005350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 38004824 - 38005056
Alignment:
| Q |
3 |
gaaatcttacggaatgatgataacgtctgataagaacaaaagtaaatttaacatccataattattctcaattacaatatctgctgaannnnnnngttgga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
38004824 |
gaaatcttacggaatgatgataacgtctgataagaacaaaagtaaatttaacatccataactattctcaattacaatatctgctgaatttttttgttgga |
38004923 |
T |
|
| Q |
103 |
accaaaagtgaaatttcaccacaatgaaactttgaaaaccaattatattgactcccactaaaataaaattcaattgtcaattaacttgaattagaatcat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38004924 |
accaaaagtgaaatttcaccacaatgaaactttgaaaaccaattatattgactcccactaaaataaaattcaattgtcaattaacttgaattagaatcat |
38005023 |
T |
|
| Q |
203 |
cgatccccacaaatactcaatccatcatgcctc |
235 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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| T |
38005024 |
cgatccccaaaaatactcaatccatcatgcctc |
38005056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 311 - 533
Target Start/End: Complemental strand, 26462679 - 26462457
Alignment:
| Q |
311 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacattaacatttttagaaagcctcaacaagctcctc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
26462679 |
caccataaagtactaaagagtgataacatcagtcttgggtggttcagttggatcaaaatcatcaacaacaacatttttagaaagtctcaacaagctcctc |
26462580 |
T |
|
| Q |
411 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
26462579 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgctttctcaaacaacattgtatccttgttat |
26462480 |
T |
|
| Q |
511 |
ttggacccaacaaacaatgtccc |
533 |
Q |
| |
|
|||| |||||||||||||||||| |
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|
| T |
26462479 |
ttggtcccaacaaacaatgtccc |
26462457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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