View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_50 (Length: 239)
Name: NF11279_low_50
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45932538 - 45932315
Alignment:
| Q |
1 |
cacatttgtcacgtatatacgtggtgaaatgaaattaagagaagaaaatgtagtatttaattgtgtgtagaacaaacccgtttcacacacacnnnnnnnn |
100 |
Q |
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| T |
45932538 |
cacatttgtcacgtatatacgtggtgaaatgaaattaagagaagaaaatgtagtatttaattgtgtgtagaacaaacccgtttcacacacaaaaaaaaaa |
45932439 |
T |
|
| Q |
101 |
n--gaacaaatattctttattacaaatcatgcacacatgcataacaatgctgcttattgaagatactctctggcatattttcatttatcacggaattaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45932438 |
aaagaacaaatattctttattacaaatcatgcacacatgcataacaatgctgcttattgaagatactctctggcatattttcatttatcacggaattaat |
45932339 |
T |
|
| Q |
199 |
cctgggccttaatctacacgtaat |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
45932338 |
cctgggccttaatctacacgtaat |
45932315 |
T |
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