View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_56 (Length: 210)
Name: NF11279_low_56
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 33861025 - 33860838
Alignment:
| Q |
19 |
ctttaaacttgtatttcaannnnnnnnaataatccatttatttaagtacctaattatcatctatctcttacagatggatgccgctaactactgcatgttt |
118 |
Q |
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| T |
33861025 |
ctttaaacttgtatttcaattttttttaataatccatttatttaagtacctaattatcatctatctcttacagatggatgccgctaactgctgcatgttt |
33860926 |
T |
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| Q |
119 |
aggtttcaagaaattcagagcaaacttcattcctttttggggaaagcttggctataacctagacaaagttccatttgttcccatctctg |
207 |
Q |
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| T |
33860925 |
aggtttcaagaaattcagagcaaacttcattgcttttt-ggaaaagcttggctataacctagacaaagttccatttgttcccatctctg |
33860838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 3300772 - 3300731
Alignment:
| Q |
166 |
ttggctataacctagacaaagttccatttgttcccatctctg |
207 |
Q |
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| T |
3300772 |
ttggctataacccagacaaaattccatttgttcccatctctg |
3300731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 43045038 - 43044997
Alignment:
| Q |
166 |
ttggctataacctagacaaagttccatttgttcccatctctg |
207 |
Q |
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| T |
43045038 |
ttggctataacccagacaaaattccatttgttcccatctctg |
43044997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 43066953 - 43066994
Alignment:
| Q |
166 |
ttggctataacctagacaaagttccatttgttcccatctctg |
207 |
Q |
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| T |
43066953 |
ttggctataacccagacaaaattccatttgttcccatctctg |
43066994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 43083882 - 43083841
Alignment:
| Q |
166 |
ttggctataacctagacaaagttccatttgttcccatctctg |
207 |
Q |
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| T |
43083882 |
ttggctataacccagacaaaattccatttgttcccatctctg |
43083841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 38138102 - 38138143
Alignment:
| Q |
166 |
ttggctataacctagacaaagttccatttgttcccatctctg |
207 |
Q |
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| T |
38138102 |
ttggctataacctagatgaaattccatttgttcccatctctg |
38138143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 4231503 - 4231462
Alignment:
| Q |
166 |
ttggctataacctagacaaagttccatttgttcccatctctg |
207 |
Q |
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|||||||||||| ||| ||| ||||||||||||||||||||| |
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| T |
4231503 |
ttggctataacccagataaaattccatttgttcccatctctg |
4231462 |
T |
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