View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_6 (Length: 502)
Name: NF11279_low_6
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 459
Target Start/End: Original strand, 13506429 - 13506877
Alignment:
| Q |
15 |
gggaggaaggttggtaatcggagggataccnnnnnnn-ggacggacccgtggttgggaggtcaatctttatgtaggaagtttac--tttagatgactatt |
111 |
Q |
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| T |
13506429 |
gggaggaaggttggtaatgggagggataccttttttttggacggatccgtggttggaaggtcagcctttatgtaggaagtttagagtttagatgactatt |
13506528 |
T |
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| Q |
112 |
tgattttgcggagaataagtcgattacggtggttgtgatgtgtgatttgggtaataataat---tatgaagcataaaaataatgttataaatatgatgtg |
208 |
Q |
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| T |
13506529 |
tgatttagcggagaataaatcgattacggtggttgtgatgtgtgatttgggtaataataataattatgaagcataaaaataatgttataaatatgatgtg |
13506628 |
T |
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| Q |
209 |
ataacattattatttgttcctatagatctatatcatatctaaaccaccaaaggaaccttaagagtactaaaacacacaaatttcactaacgttacctata |
308 |
Q |
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| T |
13506629 |
ataacattattatttgtttctatagatctatatcatatctaaaccagcaaaggaaccttaagagtactaaaacac--aaatttcactaacgttacctata |
13506726 |
T |
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| Q |
309 |
gttagatcaattatgaagcttgcccccaatattcaatcatctttctcatttttaataggcaagtgttaattggtttggttagttttccatgcttgaacca |
408 |
Q |
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| T |
13506727 |
gttaggtcaattatgaagcttgcccccaatattcaatcatctttctcatttttaataggcaagtgttaattggtttggttagttttccatacttgaacca |
13506826 |
T |
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| Q |
409 |
tgaacttcttgattagtattcttcccgcttccgaaactatcttttctaaag |
459 |
Q |
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| T |
13506827 |
tgaccttcttcattagtattctttccgctttcgaaactatcttttataaag |
13506877 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 12032575 - 12032628
Alignment:
| Q |
110 |
tttgattttgcggagaataagtcgattacggtggttgtgatgtgtgatttgggt |
163 |
Q |
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| T |
12032575 |
tttgattttgcggggaataagtcgattacggttgtggtgatgtgtgatttgggt |
12032628 |
T |
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