View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11279_low_9 (Length: 488)
Name: NF11279_low_9
Description: NF11279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11279_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 34409523 - 34409141
Alignment:
| Q |
9 |
agcagagatagagttgaagctggggcactgacagagaacaaagtttacagatgcaaagataacaatccaataggaagttctaatttttgtacatgttggg |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409523 |
agcagaaatagagttgaagctggggcactgacagagaacaaagtttacagatgcaaagataacaatccaataggaagttctaatttttgtacatgttggg |
34409424 |
T |
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| Q |
109 |
catatagattcttgaaccttcttcaatgatttgcctccagtaaccatataagcaatacatgtaccaacctcaacgagtagttgttgtggaacaatgatat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409423 |
catatagattcttgaaccttcttcaatgatttgcctccagtaaccatataagcaatacatgtaccaacctcaacgagtagttgttgtggaacaatgatat |
34409324 |
T |
|
| Q |
209 |
atagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409323 |
atagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatag |
34409224 |
T |
|
| Q |
309 |
agtgaacaatgtgattatccatgacattatcaggataactgaacccggacccctatttttcatatagtccaataaaagcaaaa |
391 |
Q |
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| T |
34409223 |
agtgaacaatgtgattatccatgacattatcaggataactgaacccggacccctatttttcatatagtccaataaaagcaaaa |
34409141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 34409095 - 34409062
Alignment:
| Q |
440 |
gatctctgtttaaatgcatatttataaataagat |
473 |
Q |
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| T |
34409095 |
gatctctgtttaaatgcatatttataaataagat |
34409062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 332
Target Start/End: Complemental strand, 43853220 - 43853134
Alignment:
| Q |
246 |
ctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaacaatgtgattatccatga |
332 |
Q |
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| T |
43853220 |
ctcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccatga |
43853134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 332
Target Start/End: Original strand, 7979381 - 7979508
Alignment:
| Q |
205 |
atatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgcc |
304 |
Q |
| |
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||||| ||||| |||||| ||||||||||||||||| | ||||| || || ||||| | | |||| || |||||||||||||| ||||||||||||| |
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| T |
7979381 |
atataaagacctaattttttcccaaaagcatgttgacctaattcatggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccatttgcc |
7979480 |
T |
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| Q |
305 |
atagagtgaacaatgtgattatccatga |
332 |
Q |
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| || ||| | |||||||| |||||||| |
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| T |
7979481 |
aaagtgtgtagaatgtgatgatccatga |
7979508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 332
Target Start/End: Original strand, 14198760 - 14198905
Alignment:
| Q |
187 |
agttgttgtggaacaatgatatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcat |
286 |
Q |
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||||||||||| |||| ||||| |||||||| ||| |||||||||| |||||| || |||||||| || || || | | | || || |||||||||| |
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| T |
14198760 |
agttgttgtggcacaacaatatacagacccaacttttcaccaaaagcatattgacccagttcatgatatctatcgaaacgtttcccgggtaccatttcat |
14198859 |
T |
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| Q |
287 |
gcatttcaaccatttgccatagagtgaacaatgtgattatccatga |
332 |
Q |
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| T |
14198860 |
gcatctcaaccatttgccataacgtgtataatgtgatgaaccatga |
14198905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 38827385 - 38827460
Alignment:
| Q |
237 |
ttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtg |
312 |
Q |
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| T |
38827385 |
ttgacccaactcatgatacctatccaatctctttccgggaactatttcatgcatctcaaccatttgccatatagtg |
38827460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 42986374 - 42986447
Alignment:
| Q |
247 |
tcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaacaatgt |
320 |
Q |
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||||||||| ||||||||||| |||||| || |||||||||||||| |||||||||| |||| ||||||| |
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| T |
42986374 |
tcatgatacttgtcaaatctttttcctgatacggattcatgcatttcaatcatttgccatgcagtgtacaatgt |
42986447 |
T |
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