View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1127_high_5 (Length: 254)
Name: NF1127_high_5
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 26598113 - 26597945
Alignment:
| Q |
54 |
ttgtacctagagacttcatcccataaaggacctttttgattagcttctttaaatttagggtcaagacgagatctgatttcaagaagagtaagagtttctt |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26598113 |
ttgtacctagagacttcatcccataaaggacctttttgattagcttctttaaatttagggtcaagacgagatctgatttcaagaagagtaagagtttctt |
26598014 |
T |
|
| Q |
154 |
gtcttggccatcttccggtggatgcatctccacccatataacctgtggtctcaggagttgaaacactag |
222 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26598013 |
gtcttggccatcttccagtggatgcatctccacccatataacctgtggtctcaggagttgaaacactag |
26597945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 41606457 - 41606509
Alignment:
| Q |
114 |
tcaagacgagatctgatttcaagaagagtaagagtttcttgtcttggccatct |
166 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| |||||||| |||||||| |
|
|
| T |
41606457 |
tcaagacgagatctgatttctagaagagaaagagtctcttgtctgggccatct |
41606509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University