View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1127_low_1 (Length: 715)
Name: NF1127_low_1
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 196 - 670
Target Start/End: Complemental strand, 6069773 - 6069295
Alignment:
| Q |
196 |
gacaaaaaataaatattattcatatttatttagtttttaa----caaatattattctttcttgtagataactcaattgaaaaattgatgaataactgaat |
291 |
Q |
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| T |
6069773 |
gacaaaaaataaatattattcatatttatttagttattaattaacaaatattattctttcttgtagataactcaattgaaaaactgatgaataactgaat |
6069674 |
T |
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| Q |
292 |
gacagcttttactattagtgacttttttatgagcttccatagtgggggaatttggaatcctaatttgaattcatgataaaatctacaaaagctttggtgc |
391 |
Q |
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| T |
6069673 |
gacagcttttactattagtgacttttttatgagcttccatagtgggggaatttggaatcctaatttgaattcatgataaaatctacaaaagctttggtgc |
6069574 |
T |
|
| Q |
392 |
ttatgctttaaatttttggaaactcatacaaatttttgatttgttgaagacacaagattagcatttttccattttagtaaaatgaaaatcaataaaacat |
491 |
Q |
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| T |
6069573 |
ttatgctttaaatttttggaaactcatacaaatttttgatttgttgaagacacaagattagcatttttccattttagtaaaatgaaaatcaataaaacat |
6069474 |
T |
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| Q |
492 |
tatattgtggcatagaatttgtgaaccagttatgtcttgagtatataaataagtatcaactctagtggattcattatgcatgtcaatatattgtcaaagt |
591 |
Q |
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| T |
6069473 |
tatattgtggcatagattttgtgaaccagttatgtcttgagtatataaataagtatcaactctagtggattcattatgcatgtcaatatattgtcaaagt |
6069374 |
T |
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| Q |
592 |
tgtgctaccagacataggttggaaagatggtgtttgtgaaaaggtccaaagtgaagcttcattagaagtagtacatgca |
670 |
Q |
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| T |
6069373 |
tgtgctaccagacataggttggaaagatggtgtttgtgaaaaggtccaaagtgaagcttcattagaagtagtacatgca |
6069295 |
T |
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