View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1127_low_11 (Length: 294)
Name: NF1127_low_11
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 47284825 - 47285062
Alignment:
| Q |
9 |
agaatatggaattgtagtgtagcttcaacaaaaagaagtttatgcttcatcttcttaaccaatatttttcaacccatcttttatcttatcaactttgtag |
108 |
Q |
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| T |
47284825 |
agaatatggaattgtagtgtagcttcaacaaaaagaagtttatgcttcatcttcttaaccgatatttttcaacccatcttttatcttatcaactttgtag |
47284924 |
T |
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| Q |
109 |
cattgacaccatcacaatattaacacatataattacattgaattaa---attttcacaaatgtttacatagtgtcgtgtctaagtcggtgtttcatagct |
205 |
Q |
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| T |
47284925 |
cattgacgccatcacaatattaacacatataattacattgaattaatttattttcacaaatttttacatagtgtcgtgtctaagtcggtgtttcatagct |
47285024 |
T |
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| Q |
206 |
taggagatatttatcttttgatatgtagaatatgtttt |
243 |
Q |
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| T |
47285025 |
taggagatatttgtcttttgacatgtagaatatgtttt |
47285062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 47285059 - 47285103
Alignment:
| Q |
221 |
ttttgatatgtagaatatgttttacactaaaaggtgtgtttgtgt |
265 |
Q |
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| T |
47285059 |
ttttgatatgtagaatatgttttacactaaaaggtgtgtttgtgt |
47285103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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