View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1127_low_12 (Length: 288)
Name: NF1127_low_12
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 11184874 - 11184706
Alignment:
| Q |
67 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtggtgaaaataattcaagtatttgcattaagaaaacaagt |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11184874 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtggtgaaaataattcaagtatttgcattaagaaaacaagt |
11184775 |
T |
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| Q |
167 |
gggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11184774 |
gggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
11184706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 20474402 - 20474234
Alignment:
| Q |
67 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtggtgaaaataattcaagtatttgcattaagaaaacaagt |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20474402 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtggtgaaaataattcaagtatttgcattaagaaaacaagt |
20474303 |
T |
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| Q |
167 |
gggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
235 |
Q |
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| T |
20474302 |
gggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
20474234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 67 - 235
Target Start/End: Original strand, 23048284 - 23048452
Alignment:
| Q |
67 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtggtgaaaataattcaagtatttgcattaagaaaacaagt |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23048284 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtggtgaaaataattcaagtatttgcattaagaaaacaagt |
23048383 |
T |
|
| Q |
167 |
gggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
235 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23048384 |
gggctttgacccaagattatgtgacccggagaagaattaaaaatagcaaccaggtcacaatgatatata |
23048452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 67 - 235
Target Start/End: Original strand, 50095981 - 50096153
Alignment:
| Q |
67 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtg----gtgaaaataattcaagtatttgcattaagaaaac |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50095981 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtgatgaatgaaaataattcaagtatttgcattaagaaaac |
50096080 |
T |
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| Q |
163 |
aagtgggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50096081 |
aagtgggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
50096153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 67 - 235
Target Start/End: Original strand, 8434456 - 8434628
Alignment:
| Q |
67 |
gaaggaaataagtttattggccaaccaagaaaaacaaaagtgtgataataattgaatgagtggtgaa----aataattcaagtatttgcattaagaaaac |
162 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
8434456 |
gaaggaaataagtttattggccaaccaaaaaaaacaaaagtgtgataataattgaatgagtggtgaatgaaaataattcaagtatttgcattaggaaaac |
8434555 |
T |
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| Q |
163 |
aagtgggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434556 |
aagtgggctttgacccaagattatgtgacccgaagaagaattaaaaatagcaaccaggtcacaatgatatata |
8434628 |
T |
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