View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1127_low_15 (Length: 251)
Name: NF1127_low_15
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_low_15 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 47073525 - 47073304
Alignment:
| Q |
30 |
ctatcaggacccactttatttggcccggttataaacttggctgcacaaatggccgcagagtccctttcatcatataacagctctaagtactatgtattgc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47073525 |
ctatcaggacccactttatttggcccggttataaatttggctgcacaaatggctgcagcgtccctttcatcatataacagctctaagtactatgtattgc |
47073426 |
T |
|
| Q |
130 |
ttatcataacggtgagaaagacacaaagtactatgatttaagaatagaattttgatacatttttcgtgtaaaactttttacactgtcaaacaatcacggt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47073425 |
ttatcataacggtgagaaagacacaaagtactatgatttaagaatagaattttgatacatttttagtgtaaaactttttacactgtcaaacaatcacggt |
47073326 |
T |
|
| Q |
230 |
caatcatatatctatgtgactt |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47073325 |
caatcatatatctatgtgactt |
47073304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 47055364 - 47055244
Alignment:
| Q |
30 |
ctatcaggacccactttatttggcccggttataaacttggctgcacaaatggccgcagagtccctttcatcatataacagctctaagtactatgtattgc |
129 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47055364 |
ctatcaggacccactttgtttggcccagttataaacttggctgcacaactggctgcagattccctttcatcatataacagctctaagtactatgtattgc |
47055265 |
T |
|
| Q |
130 |
ttatcataacggtgagaaaga |
150 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
47055264 |
ttatcataacggtaagaaaga |
47055244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 18231624 - 18231850
Alignment:
| Q |
30 |
ctatcaggacccactttatttggcccggttataaacttggctgcacaaatggccgcagagtccctttcatcatataacagctctaagtactatgtattgc |
129 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| |||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18231624 |
ctatcaggacccactttatttggaccagttatcaacatggctgcacaaatggctgcagaagcgctttcatcatataacagcactaagtactatgtattgc |
18231723 |
T |
|
| Q |
130 |
ttatcataacggtgagaaagacacaaagtactatgatttaagaatag-----aattttgatacatttttcgtgtaaaactttttacactgtcaaacaatc |
224 |
Q |
| |
|
||||||||||||||||||| |||| ||||| ||||||||||| ||| | ||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
18231724 |
ttatcataacggtgagaaatacactgagtacaatgatttaagattagagtatagttttgatacatttttagtgtaaaacattttacactgtcaaacaatc |
18231823 |
T |
|
| Q |
225 |
acggtcaatcatatatctatgtgactt |
251 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18231824 |
acggtcaatcatatatctatgtgactt |
18231850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 726758 - 726717
Alignment:
| Q |
178 |
attttgatacatttttc-gtgtaaaactttttacactgtcaa |
218 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
726758 |
attttgatacatttttcagtgtaaaacgttttacactgtcaa |
726717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 49601488 - 49601440
Alignment:
| Q |
177 |
aattttgatacatttttcgtgtaaaactttttacactgtcaaacaatca |
225 |
Q |
| |
|
||||||||| |||| || ||||||| |||||||||||||||| |||||| |
|
|
| T |
49601488 |
aattttgattcattgttggtgtaaatctttttacactgtcaaccaatca |
49601440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University