View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1127_low_2 (Length: 673)
Name: NF1127_low_2
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 28 - 626
Target Start/End: Original strand, 15944012 - 15944610
Alignment:
| Q |
28 |
cagcaggaacattagttctttctgctctaattttcttctttgttattaagtgttgtagagcaaagagaagaaatgtgattgtaaacaataacaacacttc |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15944012 |
cagcaggaacattagttctttctgctctaattttcttctttgttaataagtgttgtagagcaaagagaagaaatgtgattgtaaacaataacaacacttc |
15944111 |
T |
|
| Q |
128 |
ttctagaccaagtttagaacatagaaatgctgtgcctcaagcaaaagcttttgagagaattgaaggtaatatcaagggacttattgttgatgaagatggt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15944112 |
ttctagaccaagtttagaacatagaaatgctgtgcctcaagcaaaagcttttgagagaattgaaggtaatatcaagggacttattgttgatgaagatggt |
15944211 |
T |
|
| Q |
228 |
ttagatgttgtttattggagaaagcttcaagatcaaaatagtaacaaggctttgcaaaatggtgttgttttggatagtcctagaaacaatgaaggttatg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15944212 |
ttagatgttgtttattggagaaagcttcaagatcaaaatattaacaaggatttgcaaaagggtgttgttttggatagtcctagaaacaatgaaggttatg |
15944311 |
T |
|
| Q |
328 |
atcatgaagaaaatcaagaggaaaaatcaaagtctattcaagaaatgcatttgcttagaggaaaatcttcaacctctcacatgaatatttttccacaaga |
427 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15944312 |
atcatgaagaaaatcaagaggaaaaatcagaatctattcaagaaatgcatttgcttagaggaaaatcttcaacctctcacatgaatatttttccacaaga |
15944411 |
T |
|
| Q |
428 |
agagtcatatacaattatgaaaattactcctcctgctcctcctcctattgttcctactactcaaccattttctctaaaccttcttccttcatcaccaaaa |
527 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15944412 |
agagtcgtatacaattatgaaaattactcctcctgctcctcctcctattgttcctactactcaaccattttctctaaaccttcttccttcatcaccaaaa |
15944511 |
T |
|
| Q |
528 |
ccaccctccacttctttttcatcaattccacaaatttcaagtcctttagtgtcatcaattccaagtatatctggtgatagaaagagtcaaaaaccgccg |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15944512 |
ccaccctccacttctttttcatcaattccacaaatttcaagtcctttagtgtcatcaattccaagtatatctggtgatagaaagagtcaaaaaccgccg |
15944610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 26282818 - 26282887
Alignment:
| Q |
329 |
tcatgaagaaaatcaagaggaaaaatcaaagtctattcaagaaatgcatttgcttagaggaaaatcttca |
398 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| ||||||||||| | | | |||||||||||||||||| |
|
|
| T |
26282818 |
tcatgaagaaaatcaagtgaaaaaatctaagtccattcaagaaatacctcttcttagaggaaaatcttca |
26282887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 26282696 - 26282745
Alignment:
| Q |
210 |
attgttgatgaagatggtttagatgttgtttattggagaaagcttcaaga |
259 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
26282696 |
attgttgatgaagatggtttagatgtgatttattggagaaaacttgaaga |
26282745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University