View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1127_low_3 (Length: 648)

Name: NF1127_low_3
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1127_low_3
NF1127_low_3
[»] scaffold0010 (1 HSPs)
scaffold0010 (56-638)||(251420-252002)
[»] chr4 (4 HSPs)
chr4 (561-613)||(41501984-41502036)
chr4 (500-531)||(29423341-29423372)
chr4 (500-550)||(14110129-14110179)
chr4 (9-54)||(20017409-20017454)
[»] chr3 (1 HSPs)
chr3 (7-54)||(51805610-51805657)
[»] chr7 (2 HSPs)
chr7 (563-609)||(39052724-39052770)
chr7 (495-553)||(37059973-37060031)
[»] chr6 (2 HSPs)
chr6 (500-552)||(17593469-17593521)
chr6 (500-552)||(17699995-17700047)
[»] chr5 (2 HSPs)
chr5 (561-613)||(29635498-29635550)
chr5 (495-552)||(16214970-16215027)
[»] chr1 (3 HSPs)
chr1 (560-604)||(33054299-33054343)
chr1 (497-552)||(27811331-27811386)
chr1 (560-610)||(22580468-22580518)
[»] chr8 (2 HSPs)
chr8 (481-550)||(4809452-4809521)
chr8 (561-609)||(3695239-3695287)
[»] chr2 (2 HSPs)
chr2 (500-552)||(29848672-29848724)
chr2 (500-549)||(28043443-28043492)


Alignment Details
Target: scaffold0010 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 56 - 638
Target Start/End: Complemental strand, 252002 - 251420
Alignment:
Q  56 ggctttggtgcagtttggactttttgttctgttgtggagttctattgctctagatctgaagttcgtgtctttttctacatatttaacaatgacaattata 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  252002 ggctttggtgcagtttggactttttgttctgttgtggagttctattgctctagatctgaagttcgtgtctttttctacatatttaacaatgacaatcata 251903  T
Q  156 ataacattttccatattatggttctctctgtttgatgtagtttgtgatggacattaagtccgttagcattcaactatgaaccaaattctatttggtcatc 255  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251902 ataacattttccatattatggttctctctgtttaatgtagtttgtgatggacattaagtccgttagcattcaactatgaaccaaattctatttggtcatc 251803  T
Q  256 ttttgaattttgatgacatattttctgttttgagttttgaccatgaatgtggtaccttcgaccttggtcatttcacaacgagtgtattctttccaacaac 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251802 ttttgaattttgatgacatattttctgttttgagttttgaccatgaatgtggtaccttcgaccttggtcatttcacaacgagtgtattctttccaacaac 251703  T
Q  356 ttcttcagtacgaatagttttatatttatataagcgaggaaactattgcaaagagatgttggagctttaggatgagacaatagttcataccatagttaca 455  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251702 ttcttcggtaagaatagttttatatttatataagcgaggaaactattgcaaagagatgttggagctttaggatgagacaatagttcataccatagttaca 251603  T
Q  456 taatacgcaatttgggttggtacacggtactcgttcagattcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtacttg 555  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||    
T  251602 taatacgcaatttgggttggtacatggtactcgttcagattcgtggtacgcgacatgagaagaattcggtacgtattggagtatagagctttggtacgtg 251503  T
Q  556 tcggtcagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaaaatttcnnnnnnncacatatatccctatg 638  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  251502 tcggtcagtggcagaggcacatagtgccgaggggatgcacttgccaaccctcaaaatttctttttttcacatatatccctatg 251420  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 561 - 613
Target Start/End: Complemental strand, 41502036 - 41501984
Alignment:
Q  561 cagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaaaatt 613  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41502036 cagtggcggaggcacatagtgctgaggggatgcacttgccaaccctcaaaatt 41501984  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 531
Target Start/End: Complemental strand, 29423372 - 29423341
Alignment:
Q  500 ggtacgcgacatgagaagaattcagtacgtat 531  Q
    ||||||||||||||||||||||||||||||||    
T  29423372 ggtacgcgacatgagaagaattcagtacgtat 29423341  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 550
Target Start/End: Complemental strand, 14110179 - 14110129
Alignment:
Q  500 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggt 550  Q
    |||||||| |||||||||||||| ||| ||| ||| |||||||||||||||    
T  14110179 ggtacgcggcatgagaagaattcggtatgtacaggggtatagagcttcggt 14110129  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 20017409 - 20017454
Alignment:
Q  9 gtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct 54  Q
    ||||||||||   ||| |||||||||||||||||||||||||||||    
T  20017409 gtcaaattccttcagagcttggattgttgaaaaacttgcaacagct 20017454  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 51805657 - 51805610
Alignment:
Q  7 aggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51805657 aggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct 51805610  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 563 - 609
Target Start/End: Complemental strand, 39052770 - 39052724
Alignment:
Q  563 gtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaa 609  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  39052770 gtggcggaggcacatagtgctgaggggatgcacttgccaaccctcaa 39052724  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 553
Target Start/End: Complemental strand, 37060031 - 37059973
Alignment:
Q  495 ttcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtact 553  Q
    |||| ||| ||| ||||||||||||||| |||||||| ||||||||||||||| |||||    
T  37060031 ttcgcggttcgctacatgagaagaattcggtacgtatgggagtatagagcttcagtact 37059973  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 552
Target Start/End: Original strand, 17593469 - 17593521
Alignment:
Q  500 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 552  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| ||||||||    
T  17593469 ggtacccgacatgagaagaattaggtacgtataggagtatagagtttcggtac 17593521  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 552
Target Start/End: Original strand, 17699995 - 17700047
Alignment:
Q  500 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 552  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| ||| ||||    
T  17699995 ggtacccgacatgagaagaattaggtacgtataggagtatagagtttcagtac 17700047  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 613
Target Start/End: Original strand, 29635498 - 29635550
Alignment:
Q  561 cagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaaaatt 613  Q
    |||||||||||| ||||||||  ||||||||||||||||||||| ||||||||    
T  29635498 cagtggcggaggtacatagtgatgaggggatgcacttgccaaccttcaaaatt 29635550  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 552
Target Start/End: Complemental strand, 16215027 - 16214970
Alignment:
Q  495 ttcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 552  Q
    |||| ||||||||||||||||||||||  ||||| |||||  ||||||| ||||||||    
T  16215027 ttcgcggtacgcgacatgagaagaatttggtacgcatagggatatagagtttcggtac 16214970  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 604
Target Start/End: Complemental strand, 33054343 - 33054299
Alignment:
Q  560 tcagtggcggaggcacatagtgccgaggggatgcacttgccaacc 604  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  33054343 tcagtggcggaggcacatagtactgaggggatgcacttgccaacc 33054299  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 552
Target Start/End: Complemental strand, 27811386 - 27811331
Alignment:
Q  497 cgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 552  Q
    |||||||||||||||||||||||||  |||||| | || |||||||||||||||||    
T  27811386 cgtggtacgcgacatgagaagaattgggtacgtttgggggtatagagcttcggtac 27811331  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 610
Target Start/End: Original strand, 22580468 - 22580518
Alignment:
Q  560 tcagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaaa 610  Q
    ||||||||||  ||||||||| |  ||||||||||||||||||||||||||    
T  22580468 tcagtggcgggtgcacatagtcctcaggggatgcacttgccaaccctcaaa 22580518  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 550
Target Start/End: Complemental strand, 4809521 - 4809452
Alignment:
Q  481 ggtactcgttcagattcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggt 550  Q
    |||||| |||| ||| || ||||||||||||||||||||||| |||| | | || |||||||||||||||    
T  4809521 ggtactggttcggatacgcggtacgcgacatgagaagaattcggtacatttgggggtatagagcttcggt 4809452  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 3695287 - 3695239
Alignment:
Q  561 cagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaa 609  Q
    ||||||| |||||||||||||| |||  ||||||||||||||| |||||    
T  3695287 cagtggcagaggcacatagtgctgagaagatgcacttgccaactctcaa 3695239  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 552
Target Start/End: Original strand, 29848672 - 29848724
Alignment:
Q  500 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 552  Q
    ||||| |||||||||||||||||  |||||| ||| |||||||||||||||||    
T  29848672 ggtacacgacatgagaagaattcgatacgtacaggggtatagagcttcggtac 29848724  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 549
Target Start/End: Complemental strand, 28043492 - 28043443
Alignment:
Q  500 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcgg 549  Q
    |||||||||||||| || |||||||||| ||| || ||||||||||||||    
T  28043492 ggtacgcgacatgaaaataattcagtacatatgggggtatagagcttcgg 28043443  T

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